Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D02_e300_08.seq
         (1493 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    23   5.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   5.8  

>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 171 FFFLSRRFGWVSRTRHQVSTK 109
           + FL   +GW   T H+ +TK
Sbjct: 9   YLFLFVHYGWSEDTTHKYTTK 29


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
 Frame = -2

Query: 118 VYKIDCSCGSSYIGPSCQI---XCSPG 47
           V    CSC S  +G  C+I    C PG
Sbjct: 241 VNSFSCSCPSGTLGYICEINVDDCRPG 267



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -2

Query: 106 DCSCGSSYIGPSCQ 65
           +C C   ++GP C+
Sbjct: 283 ECKCPPGFVGPRCE 296


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,940
Number of Sequences: 336
Number of extensions: 5191
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 44759725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)