Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D02_e300_08.seq
         (1493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    27   8.8  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   8.8  

>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 212 FKYGTRKLKKLLLIEIFYELSNKNSHR 292
           FKYGT K+K+++L E++  +     HR
Sbjct: 219 FKYGTPKMKEVILGEMYGNVVKMIRHR 245


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 461 SEVSGSICYPTINFFLLSIPES 526
           +E  GS+CYP++ FF   +P++
Sbjct: 673 TESLGSVCYPSMPFFNQYVPQN 694


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,434,036
Number of Sequences: 5004
Number of extensions: 86097
Number of successful extensions: 196
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 834495254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)