Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D02_e300_08.seq
         (1493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660...    30   5.4  
04_04_1271 - 32282865-32283167,32283429-32283561,32283683-322839...    30   5.4  
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407...    29   7.2  

>06_03_0785 -
           24563310-24565004,24565302-24565384,24565484-24566039,
           24566397-24566513,24566565-24567131,24568632-24568702,
           24569833-24569903,24570270-24570441,24571229-24572212,
           24573128-24574808
          Length = 1998

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 783 IRHQHLDCIIFY*QHK*HNRNECILKKDSSISTYLGIFY 899
           ++ + L   I Y QH  H  + CI +K+ S+++  GIF+
Sbjct: 639 VKMEVLPSTIVYTQHTDHRLDTCITQKEVSLTSLSGIFH 677


>04_04_1271 -
           32282865-32283167,32283429-32283561,32283683-32283908,
           32284058-32284274,32284398-32284558,32285309-32285449,
           32285621-32286944
          Length = 834

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 523 LWDRKKKEIYCWIANRTRDLRTSHTVIQLRHRGS 422
           +W     ++ CW+ANR R L  +  V+ +   GS
Sbjct: 72  IWFSVSDDVVCWVANRDRPLTDTSGVLVITDAGS 105


>04_04_1135 +
           31140032-31140043,31140552-31140592,31140680-31140780,
           31141113-31141419,31141565-31141661
          Length = 185

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -3

Query: 258 ISIKSNFLSFRVPYLKSVNFNGFLRVTFGFFFLSRRFGWVSRTRH 124
           I ++ N+L F   Y + VN  GF    F FFF     G     RH
Sbjct: 85  IIVRRNYLHFVKKYQRQVNNYGFYLCFFSFFFPISDLGCRYEKRH 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,344,661
Number of Sequences: 37544
Number of extensions: 550273
Number of successful extensions: 1114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4780068496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)