Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D02_e300_08.seq
         (1493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       33   0.45 
SB_10069| Best HMM Match : VWC (HMM E-Value=2.4)                       31   2.4  
SB_37027| Best HMM Match : VWC (HMM E-Value=2.4)                       31   2.4  
SB_33736| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-35)                 29   9.6  
SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13)               29   9.6  
SB_9608| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                  29   9.6  
SB_8768| Best HMM Match : TrmB (HMM E-Value=0.86)                      29   9.6  

>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 33.5 bits (73), Expect = 0.45
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 103 CSCGSSYIGPSCQIXCSPG 47
           CSCG+ + GPSC   CS G
Sbjct: 687 CSCGTGWTGPSCNASCSAG 705


>SB_10069| Best HMM Match : VWC (HMM E-Value=2.4)
          Length = 289

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 446 YCMTRSEVSGSICYPTINFFLLSIPESGQVIWDFSTQYHPGVWNLC 583
           YC +    S  IC   +       PE  ++++++ST  HP ++  C
Sbjct: 224 YCTSTLLPSTRICSIIVRVLYCGAPEYARLLYEYSTAEHPNMFGYC 269


>SB_37027| Best HMM Match : VWC (HMM E-Value=2.4)
          Length = 289

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 446 YCMTRSEVSGSICYPTINFFLLSIPESGQVIWDFSTQYHPGVWNLC 583
           YC +    S  IC   +       PE  ++++++ST  HP ++  C
Sbjct: 224 YCTSTLLPSTRICSIIVRVLYCGAPEYARLLYEYSTAEHPNMFGYC 269


>SB_33736| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-35)
          Length = 368

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 296 CIAIKTYVVIFTNVILGVLFIDFKAIKSKAKALI 397
           C+ I   ++I  NV++ VLF+  +A+++K   L+
Sbjct: 37  CLIILAVLIIAINVLITVLFVRKRALRTKTNTLL 70


>SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13)
          Length = 233

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
 Frame = +2

Query: 452 MTRSEVSG-SICYPTINFFLLSIPESGQVIW-DF 547
           + R E++G ++C  T++ FL  +PE G+V++ DF
Sbjct: 190 LDRFEMNGKALCLMTLDMFLYRVPEGGRVLYHDF 223


>SB_9608| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 197

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 356 IDFKAIKSKAKALIGNEWVFRATASVA*LYYCMTRS 463
           + FK  K++ K LI   WVF   A+   LY+  T+S
Sbjct: 132 LSFKMTKAQTKELIVFVWVFMICATAPSLYFFKTKS 167


>SB_8768| Best HMM Match : TrmB (HMM E-Value=0.86)
          Length = 480

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 128 DTRCLQNRLQLR*FLYRALVPNXLQPGGXH*XLERPPPR 12
           +T CL  RL+ + ++  A + N     G    LERPPPR
Sbjct: 336 ETACLNARLKSQVYVKGANLANIFTSPGDPLVLERPPPR 374


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,155,514
Number of Sequences: 59808
Number of extensions: 630015
Number of successful extensions: 1547
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4835964124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)