Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D02_e300_08.seq
         (1493 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231860-1|BAE19678.1| 1640|Homo sapiens hypothetical protein pr...    34   1.2  
X60957-1|CAA43290.1| 1138|Homo sapiens receptor tyrosine kinase ...    33   3.6  
BC038239-1|AAH38239.1| 1138|Homo sapiens tyrosine kinase with im...    33   3.6  
AL139289-10|CAI23385.1| 1138|Homo sapiens tyrosine kinase with i...    33   3.6  
S76436-1|AAB21121.2|  507|Homo sapiens heparan sulfate proteogly...    31   8.2  

>AB231860-1|BAE19678.1| 1640|Homo sapiens hypothetical protein
            protein.
          Length = 1640

 Score = 34.3 bits (75), Expect = 1.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 103  CSCGSSYIGPSCQIXCSPG 47
            CSC + Y GPSCQ  C PG
Sbjct: 1266 CSCAAGYHGPSCQQRCPPG 1284


>X60957-1|CAA43290.1| 1138|Homo sapiens receptor tyrosine kinase
           protein.
          Length = 1138

 Score = 32.7 bits (71), Expect = 3.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 142 GFPYQTPGVYKIDCSCGSSYIGPSCQIXCSPG 47
           G  +  P  Y   CSCGS + G  CQ  C+PG
Sbjct: 280 GLTFCLPDPY--GCSCGSGWRGSQCQEACAPG 309


>BC038239-1|AAH38239.1| 1138|Homo sapiens tyrosine kinase with
           immunoglobulin-like and EGF-like domains 1 protein.
          Length = 1138

 Score = 32.7 bits (71), Expect = 3.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 142 GFPYQTPGVYKIDCSCGSSYIGPSCQIXCSPG 47
           G  +  P  Y   CSCGS + G  CQ  C+PG
Sbjct: 280 GLTFCLPDPY--GCSCGSGWRGSQCQEACAPG 309


>AL139289-10|CAI23385.1| 1138|Homo sapiens tyrosine kinase with
           immunoglobulin-like and EGF-like domains 1 protein.
          Length = 1138

 Score = 32.7 bits (71), Expect = 3.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 142 GFPYQTPGVYKIDCSCGSSYIGPSCQIXCSPG 47
           G  +  P  Y   CSCGS + G  CQ  C+PG
Sbjct: 280 GLTFCLPDPY--GCSCGSGWRGSQCQEACAPG 309


>S76436-1|AAB21121.2|  507|Homo sapiens heparan sulfate proteoglycan
           core protein protein.
          Length = 507

 Score = 31.5 bits (68), Expect = 8.2
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -2

Query: 130 QTPGVYKIDCSCGSSYIGPSCQIXCSPGDXTSX*SGRHRG 11
           Q P +    CSC   Y+GPSCQ  C  G  T   SG + G
Sbjct: 228 QDPALEVEQCSCPPGYLGPSCQ-DCDTG-YTRTPSGLYLG 265


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,946,132
Number of Sequences: 237096
Number of extensions: 3419865
Number of successful extensions: 6042
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6040
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22142890136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)