Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D01_e292_07.seq
         (1545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66515-4|CAA91350.1|  153|Caenorhabditis elegans Hypothetical pr...    67   4e-11
Z99280-2|CAE18017.1|  129|Caenorhabditis elegans Hypothetical pr...    29   8.8  

>Z66515-4|CAA91350.1|  153|Caenorhabditis elegans Hypothetical
           protein R53.4 protein.
          Length = 153

 Score = 66.9 bits (156), Expect = 4e-11
 Identities = 32/69 (46%), Positives = 38/69 (55%)
 Frame = +2

Query: 119 KMAFGDYPKEYNPAVHGPYDPARYYGKPDTPFGQVKLNEIGGWLGRRSKTPSAVMGACSR 298
           K   G + K +N  VHGPY   RYYGK DT F  VKL ++  W+ RR KTPSA      R
Sbjct: 43  KTEVGLFDKRWNKNVHGPYCHWRYYGKLDTKFMDVKLGDLPAWMARREKTPSAFYNEFMR 102

Query: 299 AWWRWQHKY 325
             WR  + Y
Sbjct: 103 NIWRVHNLY 111


>Z99280-2|CAE18017.1|  129|Caenorhabditis elegans Hypothetical
           protein Y57G11B.6 protein.
          Length = 129

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 352 SHAYFFRLNIFVLPPPPGSAASAHNS*RSLTPATQPSA 239
           +H Y   +  F   P P S A  HNS  S  P  +PSA
Sbjct: 71  NHGYSAHVTGFEAHPSPPSTAQHHNSTMSSLPPRRPSA 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,757,830
Number of Sequences: 27780
Number of extensions: 514014
Number of successful extensions: 1159
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4452547242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)