Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C12_e379_06.seq
         (1539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    29   1.7  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    28   3.0  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   3.0  

>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 440 IIQPRVVDRASQASLQIDSLPGNFLGGEFAGVRYPASWNSLDG 568
           I Q  +VD  +   L  D+ P  F  G   G++   SWN  +G
Sbjct: 336 ITQSAIVDSLTGEGLDSDNCPVAFPNGRVYGIQSLISWNEANG 378


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 624 KTRALSPKLRTSNRGGKSAPSREFQLAGYRTPANSPPRK-FPGRLS 490
           K  AL+P+L T++R    +PS      GY + + SP R   P ++S
Sbjct: 444 KNSALNPRLVTNDRVKVKSPSLIQSSTGYGSMSQSPSRSDLPSKIS 489


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = -2

Query: 695 IDEILQNHNDVYFGN--YDSGHSMDPKPAHYHRS*ELRTVEGKVRRRGNSSLLGTALLQT 522
           IDE++ +  DV F N  Y          A+ H    +    G V R GNS+ LG  +  +
Sbjct: 658 IDEVILSIKDVIFDNNLYKQRSYQSGVAANAHLPHRVPNEHGGVSRIGNSNALGQPVSSS 717

Query: 521 HLQGSSRG 498
                S+G
Sbjct: 718 SSYSHSKG 725


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,604,914
Number of Sequences: 5004
Number of extensions: 84608
Number of successful extensions: 194
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 864227864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)