Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C12_e379_06.seq
         (1539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0360 - 2742955-2743072,2743451-2743597,2743682-2743773,274...    31   3.2  
06_03_1315 + 29270679-29270908,29270992-29271394,29271633-292717...    29   7.4  
02_05_0584 - 30135768-30135790,30136104-30136866                       29   7.4  

>11_01_0360 -
           2742955-2743072,2743451-2743597,2743682-2743773,
           2744408-2744507,2744590-2744790,2745254-2745459,
           2745619-2746045,2746172-2746411,2746514-2746719,
           2747081-2747176,2747348-2747521
          Length = 668

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 606 PKLRTSNRGGKSAPSREFQLAGYRTPANSPPRKFP 502
           P     N G    PS+  + A YRTP   PPR  P
Sbjct: 182 PDADPGNAGHSEHPSKSLETAVYRTPTLIPPRILP 216


>06_03_1315 +
           29270679-29270908,29270992-29271394,29271633-29271796,
           29271943-29272013,29272360-29272559
          Length = 355

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -1

Query: 606 PKLRTSNRGGKSAPSREFQLAGYR--TPANSPPRKFPGRLSICRLA*DALSTT 454
           PKL         A  R +   G R   P   PP   PGR + C LA  A++TT
Sbjct: 2   PKLLLLQAAAAVADRRWYGSGGRRGYLPLRHPPHVAPGRFTACLLAVAAVTTT 54


>02_05_0584 - 30135768-30135790,30136104-30136866
          Length = 261

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = -2

Query: 1208 PXSPXXXVGXPPXIGXRXXKXPXKFPPPXXGXGAARXXGGNXSSGXGXXAF 1056
            P SP    G PP  G      P  FP P    G+    G   SSG     F
Sbjct: 75   PGSPAGAGGAPPSAGSGGFPFPLPFPLPLPAPGSP-AAGAPPSSGSSGFPF 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,588,807
Number of Sequences: 37544
Number of extensions: 667704
Number of successful extensions: 1360
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4954100116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)