Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C12_e379_06.seq
         (1539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)                48   3e-05
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)       36   0.065
SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.7  
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)               30   5.7  
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)                   30   5.7  
SB_27421| Best HMM Match : Peptidase_M35 (HMM E-Value=7.1)             30   5.7  
SB_17720| Best HMM Match : Atracotoxin (HMM E-Value=3.2)               30   5.7  
SB_52653| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.9  

>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 47.6 bits (108), Expect = 3e-05
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = -3

Query: 643 QVIQWIQNPRTITEAKNFEPWREKCAVEGIPACWVPHSCKLTSKEVPGETINLQTCLRCP 464
           QVI+W++NP+ +  A  F  W   C     P C  P+ C  T+     +   + TC  CP
Sbjct: 465 QVIEWMKNPQDVNGANGFPAW--DCLTRPKPRCTTPNVCHYTTP----QDFYMPTCSDCP 518

Query: 463 VNYPWLNDPTGD 428
            ++P   +P G+
Sbjct: 519 KHFPSPTNPDGE 530


>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
          Length = 893

 Score = 36.3 bits (80), Expect = 0.065
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 655 VTMTQVIQWIQNPRTITEAKNFEPWREKCAVEGIPACW 542
           VT++Q I+WI+ P  + + K F PW  +C     PA W
Sbjct: 825 VTVSQAIEWIKTPTPLEKIKTFAPW--QCDKPAPPAPW 860


>SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 733

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 138 KSHKVLNRPIKYLCEPILHSVG*VLRLRAGL*PGTLRNCG 257
           K+ + + + IK + +  +   G  L L+ G+ PGT+ NCG
Sbjct: 431 KNSRTIIKVIKNIAKNSMLEAGQELHLKEGIEPGTIMNCG 470


>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
          Length = 1724

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 546  QAGIPSTAHFSLHGSKFLASVIVRG 620
            +AG P+T+HF LHG+  +++ +  G
Sbjct: 1131 EAGPPNTSHFGLHGASTISTTLTPG 1155


>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
          Length = 870

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 213 RLRAGL*PGTLRNCGKTYSELR*PSDYDIPNNYIYYFYVQCE 338
           +L AG  P    NC K  + LR PS +  P   I  F+ +CE
Sbjct: 22  KLLAGA-PSRDENCKKECANLRMPSTFRSPTGQIPMFFTKCE 62


>SB_27421| Best HMM Match : Peptidase_M35 (HMM E-Value=7.1)
          Length = 556

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 616 RTITEAKNFEPWREKCAVEGIPACWVPHSCKLTSKEVPGETI 491
           RT+  A +  P+   CA +GI   +VP++    S   P ETI
Sbjct: 59  RTVNTAMSVNPFSTVCANQGIDLFFVPNTDGQWSHYAPAETI 100


>SB_17720| Best HMM Match : Atracotoxin (HMM E-Value=3.2)
          Length = 389

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 138 KSHKVLNRPIKYLCEPILHSVG*VLRLRAGL*PGTLRNCG 257
           KS + + + +K + +  +   G  L L+ G+ PGT  NCG
Sbjct: 70  KSSRTITKVLKNIAKDSMLEAGQELHLKEGIEPGTNMNCG 109


>SB_52653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -3

Query: 649 MTQVIQWI-QNPR---TITEAKNFEPWREKCAVEGI 554
           + ++ QW+ QNPR    I+  +N+EPW E+     I
Sbjct: 151 LKEIDQWLNQNPREIVVISFTRNYEPWNERTIARDI 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,500,782
Number of Sequences: 59808
Number of extensions: 695300
Number of successful extensions: 1585
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1576
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5012030779
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)