Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C12_e379_06.seq
         (1539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    54   3e-07
U28735-11|AAM69114.1|  358|Caenorhabditis elegans Hypothetical p...    38   0.014
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    38   0.014
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    38   0.014

>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 54.0 bits (124), Expect = 3e-07
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
 Frame = -3

Query: 799  FDRHYEQNRAPTRASISMPHG*KIXLNS*KLSCTGLMKFYKIIT----MYISVTMTQVIQ 632
            F+R Y  NRAP   S++      + L         + KF   ++    +YI VT+ Q+I 
Sbjct: 1742 FERSYSANRAPYVLSLNADF---LQLGGHNKGMKAVQKFLNRMSAQKDVYI-VTIKQLID 1797

Query: 631  WIQNPRTITEAKNFEPWREK--CAVE-------GIPACWVPHSCKLTSKEVPGETINLQT 479
            W++ P  I+E K+     +   C +         +  C +P+ C  ++  +  +     T
Sbjct: 1798 WMKRPVPISEMKSVRGKSKAVGCPITLSFNRNPSLSTCDIPNKCLYSTPSLSSQEHQFLT 1857

Query: 478  CLRCPVNYPWLNDPTG 431
            CL CP  YPWL +P G
Sbjct: 1858 CLPCPTMYPWLENPAG 1873


>U28735-11|AAM69114.1|  358|Caenorhabditis elegans Hypothetical
           protein F48E3.8c protein.
          Length = 358

 Score = 38.3 bits (85), Expect = 0.014
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -3

Query: 655 VTMTQVIQWIQNPRTITEAKNFEPWREKCAVEG-IPACWVPHSCKLTSKEVPGETINLQT 479
           VT +Q+I +++NP  +   K+   W+ K  ++     C  P +C  + +       + + 
Sbjct: 288 VTGSQIIDYMRNPVDLNNIKSLRSWQCKPQMKDEANPCENPTTCSFSGRARGQFAHSFRM 347

Query: 478 CLRCPVNYPWL 446
           C  CP +YPW+
Sbjct: 348 CGVCPKSYPWI 358


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 38.3 bits (85), Expect = 0.014
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -3

Query: 655  VTMTQVIQWIQNPRTITEAKNFEPWREKCAVEG-IPACWVPHSCKLTSKEVPGETINLQT 479
            VT +Q+I +++NP  +   K+   W+ K  ++     C  P +C  + +       + + 
Sbjct: 2357 VTGSQIIDYMRNPVDLNNIKSLRSWQCKPQMKDEANPCENPTTCSFSGRARGQFAHSFRM 2416

Query: 478  CLRCPVNYPWL 446
            C  CP +YPW+
Sbjct: 2417 CGVCPKSYPWI 2427


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
            F48E3.8b protein.
          Length = 1299

 Score = 38.3 bits (85), Expect = 0.014
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -3

Query: 655  VTMTQVIQWIQNPRTITEAKNFEPWREKCAVEG-IPACWVPHSCKLTSKEVPGETINLQT 479
            VT +Q+I +++NP  +   K+   W+ K  ++     C  P +C  + +       + + 
Sbjct: 1229 VTGSQIIDYMRNPVDLNNIKSLRSWQCKPQMKDEANPCENPTTCSFSGRARGQFAHSFRM 1288

Query: 478  CLRCPVNYPWL 446
            C  CP +YPW+
Sbjct: 1289 CGVCPKSYPWI 1299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,766,041
Number of Sequences: 27780
Number of extensions: 529125
Number of successful extensions: 1154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4431789446
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)