Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C12_e379_06.seq
         (1539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    25   1.7  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   7.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   7.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   7.0  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 673 ITMYISVTMTQVIQWIQNPRTITEAKN 593
           + + +S+T TQV  W QN RT  + +N
Sbjct: 41  LALSLSLTETQVKIWFQNRRTKWKKQN 67


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +2

Query: 584 RFEVLSFGDSARVLDPLNDLSHSYRNIHRYDFVKFHQSSTRKLLRIQGYFSTM 742
           +F    FG   R  D +    + Y+N +  D  ++H      +LR  G  S++
Sbjct: 38  KFFDYDFGSDERRQDAILSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGVPSSL 90


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +2

Query: 584 RFEVLSFGDSARVLDPLNDLSHSYRNIHRYDFVKFHQSSTRKLLRIQGYFSTM 742
           +F    FG   R  D +    + Y+N +  D  ++H      +LR  G  S++
Sbjct: 38  KFFDYDFGSDERRQDAILSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGVPSSL 90


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +2

Query: 584 RFEVLSFGDSARVLDPLNDLSHSYRNIHRYDFVKFHQSSTRKLLRIQGYFSTM 742
           +F    FG   R  D +    + Y+N +  D  ++H      +LR  G  S++
Sbjct: 38  KFFDYDFGSDERRQDAILSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGVPSSL 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 341,592
Number of Sequences: 438
Number of extensions: 6547
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53950875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)