Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C12_e379_06.seq
         (1539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27650.1 68418.m03313 PWWP domain-containing protein hypothet...    30   4.7  
At2g16090.1 68415.m01845 zinc finger protein-related contains si...    29   8.2  

>At5g27650.1 68418.m03313 PWWP domain-containing protein hypothetical
            protein F22F7.12 - Arabidopsis thaliana, EMBL:AC009606
          Length = 1072

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 544  WVPHSCKLTSKEVPGETINLQTCLRCPVNYPWLNDPTGDGH 422
            W+  +  L    +P   +NL++CL+ PV+ P  +   G+G+
Sbjct: 890  WLDQAPPLHQPTLPPPNVNLKSCLKKPVDDPSSSSNNGNGN 930


>At2g16090.1 68415.m01845 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 593

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -3

Query: 592 FEPWREKCAVEGIPACWVP-HS--CKLTSKEV-PGETINLQTCLRCPVNYPWL-NDPTGD 428
           +E WR+KC  E     W+  H+  C    K V      NL TCL C  ++ WL  + TG 
Sbjct: 260 WELWRKKCFDESETVNWITVHTKPCPKCHKPVEKNGGCNLVTCL-CRQSFCWLCGEATGR 318

Query: 427 GH 422
            H
Sbjct: 319 DH 320


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,470,101
Number of Sequences: 28952
Number of extensions: 484136
Number of successful extensions: 953
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4125317376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)