Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C11_e371_05.seq
         (1545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    29   2.3  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   6.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   6.9  

>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 261 ILLGMIIQKKLPESKVFYYTVHFT-GN 338
           +L+ +II KKLPE+K  Y  + +T GN
Sbjct: 22  LLISLIINKKLPEAKFVYKLLDYTKGN 48


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = -2

Query: 938 NYILYPXXT-VPYXTIPXLSINLMPAILLXPVITTALIXLSWFFCQTQHSLPYISV---R 771
           NY+LY     V +  +  ++I +    +    +T     + W    T   LPYIS+    
Sbjct: 70  NYVLYKNNPLVVFLYLALITIGIASFFIYGSSLTQKFSIIDWISVLTSVLLPYISLYIAA 129

Query: 770 TSTPGCTDKRDF 735
            S PG  D +++
Sbjct: 130 KSNPGKIDLKNW 141


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -1

Query: 1188 PPPXGGXXPPPXRPPXFAFXSXPXXPP 1108
            P P  G  PPP  PP  A    P  PP
Sbjct: 754  PAPIMGGPPPPPPPPGVAGAGPPPPPP 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,098,699
Number of Sequences: 5004
Number of extensions: 74075
Number of successful extensions: 174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 868192212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)