Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C11_e371_05.seq
         (1545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    31   1.8  
07_01_0479 + 3606663-3607448                                           29   7.5  
07_03_1136 + 24218601-24218734,24218769-24219906                       29   9.9  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    29   9.9  

>08_02_0672 - 19904353-19904839,19905646-19905704,19906137-19906352,
            19906845-19907422,19907506-19908180,19908263-19908653,
            19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 16/53 (30%), Positives = 17/53 (32%)
 Frame = -1

Query: 1185 PPXGGXXPPPXRPPXFAFXSXPXXPPXVRDLPQLFXXVXPGXXRPLGXPXXXP 1027
            PP  G  PPP  PP  A  + P   P     P       P    P   P   P
Sbjct: 6    PPPDGLDPPPATPPTAAAGTPPLAVPATNTPPNPATTPTPLTPNPNPSPTLPP 58


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
 Frame = -1

Query: 1188 PPPXGGXXPPPXRPPX--FAFXSXPXXPPXVRDLPQLFXXVXPGXXRPLGXPXXXPG 1024
            PPP  G  PPP RPP     F   P  PP     P            P+G P   PG
Sbjct: 169  PPP--GQMPPPMRPPQMPIPFQRPPGVPPAFPGGPPPPPGPFMRGPPPMGPPQVRPG 223


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 20/58 (34%), Positives = 23/58 (39%)
 Frame = +2

Query: 1016 AXXPGXXXGXPRGRXXPGXTXXKSWGKSRTXGGXXGXEXKAKXGGRXGGGXXPPXGGG 1189
            A  PG   G   GR   G       G++   GG  G   +A  GG  GGG     GGG
Sbjct: 158  ARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGL--GGGGG 213


>03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,
            8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 1188 PPPXGGXXPPPXRPP 1144
            PPP GG  PPP  PP
Sbjct: 297  PPPVGGTQPPPPPPP 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,834,128
Number of Sequences: 37544
Number of extensions: 504448
Number of successful extensions: 2224
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2027
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4977304332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)