Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_C11_e371_05.seq
(1545 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23032| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23) 41 0.002
SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.002
SB_59249| Best HMM Match : zf-C2H2 (HMM E-Value=0.016) 41 0.003
SB_58492| Best HMM Match : DUF1196 (HMM E-Value=5) 41 0.003
SB_55051| Best HMM Match : RVT_1 (HMM E-Value=0.014) 41 0.003
SB_52360| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 41 0.003
SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 41 0.003
SB_42604| Best HMM Match : DUF1196 (HMM E-Value=5) 41 0.003
SB_14835| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 41 0.003
SB_14424| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 41 0.003
SB_10362| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.003
SB_263| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 41 0.003
SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36) 41 0.003
SB_58057| Best HMM Match : RVT_1 (HMM E-Value=0.0085) 41 0.003
SB_47109| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.003
SB_35729| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 41 0.003
SB_28415| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 41 0.003
SB_26934| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 41 0.003
SB_10529| Best HMM Match : zf-C2H2 (HMM E-Value=0.0034) 41 0.003
SB_2372| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 41 0.003
SB_54448| Best HMM Match : RVT_1 (HMM E-Value=0.096) 40 0.004
SB_54320| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.004
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 40 0.004
SB_41718| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34) 40 0.004
SB_41510| Best HMM Match : Minor_tail_Z (HMM E-Value=3.5) 40 0.004
SB_40055| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 40 0.004
SB_32337| Best HMM Match : CaMBD (HMM E-Value=5.9) 40 0.004
SB_19821| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.004
SB_14108| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 40 0.004
SB_9519| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 40 0.004
SB_3604| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.004
SB_6922| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34) 40 0.004
SB_6390| Best HMM Match : BCL_N (HMM E-Value=8.4) 40 0.004
SB_5327| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 40 0.004
SB_12945| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.007
SB_777| Best HMM Match : DUF1126 (HMM E-Value=5.1) 40 0.007
SB_54746| Best HMM Match : RVT_1 (HMM E-Value=8.4e-11) 40 0.007
SB_41028| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.009
SB_32142| Best HMM Match : RVT_1 (HMM E-Value=2.29953e-42) 39 0.009
SB_14018| Best HMM Match : AT_hook (HMM E-Value=3.3) 39 0.009
SB_53622| Best HMM Match : RVT_1 (HMM E-Value=7.90332e-43) 39 0.009
SB_42164| Best HMM Match : AT_hook (HMM E-Value=3.3) 39 0.009
SB_37379| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.009
SB_34465| Best HMM Match : AT_hook (HMM E-Value=3.3) 39 0.009
SB_27484| Best HMM Match : RVT_1 (HMM E-Value=0.035) 39 0.009
SB_25973| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 39 0.009
SB_17490| Best HMM Match : AT_hook (HMM E-Value=3.3) 39 0.009
SB_41884| Best HMM Match : RVT_1 (HMM E-Value=1.69557e-43) 39 0.012
SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.012
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.016
SB_43044| Best HMM Match : zf-C2H2 (HMM E-Value=0.83) 38 0.022
SB_35827| Best HMM Match : zf-C2H2 (HMM E-Value=0.83) 38 0.022
SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07) 38 0.022
SB_53437| Best HMM Match : DUF1126 (HMM E-Value=5.1) 38 0.022
SB_50765| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.022
SB_49894| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 38 0.022
SB_30624| Best HMM Match : AT_hook (HMM E-Value=3.3) 38 0.022
SB_2346| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.022
SB_27308| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.028
SB_52890| Best HMM Match : PH (HMM E-Value=1e-06) 37 0.038
SB_3826| Best HMM Match : AT_hook (HMM E-Value=3.3) 37 0.038
SB_44400| Best HMM Match : AT_hook (HMM E-Value=3.3) 37 0.038
SB_47925| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.050
SB_42199| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.050
SB_8735| Best HMM Match : RVT_1 (HMM E-Value=2.00386e-43) 37 0.050
SB_59601| Best HMM Match : AT_hook (HMM E-Value=3.3) 36 0.066
SB_34904| Best HMM Match : RVT_1 (HMM E-Value=1.1e-06) 36 0.087
SB_32967| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.087
SB_4450| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.087
SB_57364| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.087
SB_56454| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.087
SB_42893| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.087
SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20) 36 0.087
SB_24501| Best HMM Match : RVT_1 (HMM E-Value=4.2e-37) 36 0.087
SB_6135| Best HMM Match : CSD (HMM E-Value=5.4) 36 0.087
SB_56583| Best HMM Match : RNA_pol_Rpb7_N (HMM E-Value=5.6) 35 0.15
SB_28333| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.20
SB_24941| Best HMM Match : DPRP (HMM E-Value=1) 35 0.20
SB_47792| Best HMM Match : RNA_pol_Rpb7_N (HMM E-Value=5.6) 35 0.20
SB_46702| Best HMM Match : LETM1 (HMM E-Value=5.5) 35 0.20
SB_29550| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.20
SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13) 35 0.20
SB_13171| Best HMM Match : AT_hook (HMM E-Value=6.4) 35 0.20
SB_58494| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.27
SB_8964| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.27
SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.35
SB_19159| Best HMM Match : RVT_1 (HMM E-Value=0.00032) 33 0.46
SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.61
SB_53195| Best HMM Match : CaMBD (HMM E-Value=1.4) 33 0.61
SB_50753| Best HMM Match : zf-C2H2 (HMM E-Value=0.012) 33 0.61
SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.61
SB_3152| Best HMM Match : RVT_1 (HMM E-Value=5.4006e-42) 33 0.81
SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.1
SB_36804| Best HMM Match : tRNA_int_endo (HMM E-Value=3.9) 32 1.1
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 32 1.1
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 32 1.4
SB_4898| Best HMM Match : CaMBD (HMM E-Value=1.2) 31 1.9
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 31 2.5
SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36) 31 2.5
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.5
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 29 7.5
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 29 7.5
SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05) 29 10.0
>SB_23032| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23)
Length = 855
Score = 41.1 bits (92), Expect = 0.002
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 649 RRGIRTDTKIKVYRAVVLSTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 705
>SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1395
Score = 41.1 bits (92), Expect = 0.002
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 926 RRGIKTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 982
>SB_59249| Best HMM Match : zf-C2H2 (HMM E-Value=0.016)
Length = 236
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 30 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 86
>SB_58492| Best HMM Match : DUF1196 (HMM E-Value=5)
Length = 283
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 149 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 205
>SB_55051| Best HMM Match : RVT_1 (HMM E-Value=0.014)
Length = 372
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 249 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 305
>SB_52360| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 455
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 249 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 305
>SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 503
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 297 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 353
>SB_42604| Best HMM Match : DUF1196 (HMM E-Value=5)
Length = 294
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 150 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 206
>SB_14835| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 382
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 176 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 232
>SB_14424| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 272
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 66 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 122
>SB_10362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K+H +N T LR I +R +K
Sbjct: 150 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKHHAMKLNHFHTTCLRKILDVRWQEK 206
>SB_263| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 272
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 66 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 122
>SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36)
Length = 1092
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 886 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 942
>SB_58057| Best HMM Match : RVT_1 (HMM E-Value=0.0085)
Length = 576
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 381 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 437
>SB_47109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 66 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 122
>SB_35729| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 237
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 31 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 87
>SB_28415| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 356
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 150 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 206
>SB_26934| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 1443
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 1237 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 1293
>SB_10529| Best HMM Match : zf-C2H2 (HMM E-Value=0.0034)
Length = 272
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 66 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 122
>SB_2372| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 414
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 208 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEK 264
>SB_54448| Best HMM Match : RVT_1 (HMM E-Value=0.096)
Length = 343
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ +S+ +++ V+ V++ TL+YG E W + HE + + LR+I +R D+
Sbjct: 255 RRGISQCTKIKVYRAVVLTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDR 311
>SB_54320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 40.3 bits (90), Expect = 0.004
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 40 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHALKLNHFHTTCLRKILNVRWQEK 96
>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
Length = 1086
Score = 40.3 bits (90), Expect = 0.004
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + +++ V+ V++ TL+YGSE W K H +N T LR I +R +K
Sbjct: 528 RRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHALKLNHFHTTCLRKILNVRWQEK 584
>SB_41718| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34)
Length = 470
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ +S+ +++ V+ V++ TL+YG E W + HE + + LR+I +R D+
Sbjct: 382 RRGISQCTKIKVYRAVVLTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDR 438
>SB_41510| Best HMM Match : Minor_tail_Z (HMM E-Value=3.5)
Length = 208
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ +S+ +++ V+ V++ TL+YG E W + HE + + LR+I +R D+
Sbjct: 66 RRGISQCTKIKVYRAVVLTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDR 122
>SB_40055| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 303
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ +S+ +++ V+ V++ TL+YG E W + HE + + LR+I +R D+
Sbjct: 92 RRGISQCTKIKVYRAVVLTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDR 148
>SB_32337| Best HMM Match : CaMBD (HMM E-Value=5.9)
Length = 289
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ +S+ +++ V+ V++ TL+YG E W + HE + + LR+I +R D+
Sbjct: 187 RRGISQCTKIKVYRAVVLTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDR 243
>SB_19821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ +S+ +++ V+ V++ TL+YG E W + HE + + LR+I +R D+
Sbjct: 317 RRGISQCTKIKVYRAVVLTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDR 373
>SB_14108| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 404
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ +S+ +++ V+ V++ TL+YG E W + HE + + LR+I +R D+
Sbjct: 193 RRGISQCTKIKVYRAVVLTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDR 249
>SB_9519| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 299
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ +S+ +++ V+ V++ TL+YG E W + HE + + LR+I +R D+
Sbjct: 88 RRGISQCTKIKVYRAVVLTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDR 144
>SB_3604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1319
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ +S+ +++ V+ V++ TL+YG E W + HE + + LR+I +R D+
Sbjct: 1108 RRGISQCTKIKVYRAVVLTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDR 1164
>SB_6922| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34)
Length = 425
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ +S+ +++ V+ V++ TL+YG E W + HE + + LR+I +R D+
Sbjct: 323 RRGISQCTKIKVYRAVVLTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDR 379
>SB_6390| Best HMM Match : BCL_N (HMM E-Value=8.4)
Length = 194
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ +S+ +++ V+ V++ TL+YG E W + HE + + LR+I +R D+
Sbjct: 133 RRGISQCTKIKVYRAVVLTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDR 189
>SB_5327| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 328
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ +S+ +++ V+ V++ TL+YG E W + HE + + LR+I +R D+
Sbjct: 117 RRGISQCTKIKVYRAVVLTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDR 173
>SB_12945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 39.5 bits (88), Expect = 0.007
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E +N M LR
Sbjct: 78 VTTMSKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLR 137
Query: 859 SIAGMRLIDKXGI 897
I G+ DK I
Sbjct: 138 RILGIHWSDKLRI 150
>SB_777| Best HMM Match : DUF1126 (HMM E-Value=5.1)
Length = 173
Score = 39.5 bits (88), Expect = 0.007
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E +N M LR
Sbjct: 79 VTTMTKLSSRVWENKKLTISTKITVYRACILNTLLYGSESWTTYARQEKRLNTFHMRCLR 138
Query: 859 SIAGMRLIDK 888
I G+ DK
Sbjct: 139 RILGIHWSDK 148
>SB_54746| Best HMM Match : RVT_1 (HMM E-Value=8.4e-11)
Length = 959
Score = 39.5 bits (88), Expect = 0.007
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ +S+ +++ V+ V++ TL+YG E W + HE + + LR+I +R D+
Sbjct: 812 RRGISQCTKIKVYRAVVLTTLLYGWETWTIYRRHEKLLQQFHLRCLRNILNIRWQDR 868
>SB_41028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 798
Score = 39.1 bits (87), Expect = 0.009
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E +N M LR
Sbjct: 548 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLR 607
Query: 859 SIAGMRLIDK 888
I G+ DK
Sbjct: 608 RILGIHWSDK 617
>SB_32142| Best HMM Match : RVT_1 (HMM E-Value=2.29953e-42)
Length = 590
Score = 39.1 bits (87), Expect = 0.009
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E +N M LR
Sbjct: 510 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLR 569
Query: 859 SIAGMRLIDK 888
I G+ DK
Sbjct: 570 RILGIHWSDK 579
>SB_14018| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 238
Score = 39.1 bits (87), Expect = 0.009
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E +N M LR
Sbjct: 79 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLR 138
Query: 859 SIAGMRLIDK 888
I G+ DK
Sbjct: 139 RILGIHWSDK 148
>SB_53622| Best HMM Match : RVT_1 (HMM E-Value=7.90332e-43)
Length = 458
Score = 39.1 bits (87), Expect = 0.009
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E +N M LR
Sbjct: 299 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLR 358
Query: 859 SIAGMRLIDK 888
I G+ DK
Sbjct: 359 RILGIHWSDK 368
>SB_42164| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 290
Score = 39.1 bits (87), Expect = 0.009
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E +N M LR
Sbjct: 131 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLR 190
Query: 859 SIAGMRLIDK 888
I G+ DK
Sbjct: 191 RILGIHWSDK 200
>SB_37379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 39.1 bits (87), Expect = 0.009
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQN--VSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTG 852
+T+ +A +F +N ++ ++++V+ ++ TL+YGSE W E +N M
Sbjct: 112 LTSSSDAKDAFYMWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRC 171
Query: 853 LRSIAGMRLIDK 888
LR I G+ DK
Sbjct: 172 LRRILGIHWSDK 183
>SB_34465| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 280
Score = 39.1 bits (87), Expect = 0.009
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E +N M LR
Sbjct: 79 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLR 138
Query: 859 SIAGMRLIDK 888
I G+ DK
Sbjct: 139 RILGIHWSDK 148
>SB_27484| Best HMM Match : RVT_1 (HMM E-Value=0.035)
Length = 322
Score = 39.1 bits (87), Expect = 0.009
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E +N M LR
Sbjct: 228 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLR 287
Query: 859 SIAGMRLIDK 888
I G+ DK
Sbjct: 288 RILGIHWSDK 297
>SB_25973| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 416
Score = 39.1 bits (87), Expect = 0.009
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E +N M LR
Sbjct: 188 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLR 247
Query: 859 SIAGMRLIDK 888
I G+ DK
Sbjct: 248 RILGIHWSDK 257
>SB_17490| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 348
Score = 39.1 bits (87), Expect = 0.009
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E +N M LR
Sbjct: 131 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLR 190
Query: 859 SIAGMRLIDK 888
I G+ DK
Sbjct: 191 RILGIHWSDK 200
>SB_41884| Best HMM Match : RVT_1 (HMM E-Value=1.69557e-43)
Length = 677
Score = 38.7 bits (86), Expect = 0.012
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E +N M LR
Sbjct: 470 VTTMTKLSSRVWENKKLTISTKITVYRACVLSTLLYGSESWTTYARQEKRLNTFHMRCLR 529
Query: 859 SIAGMRLIDK 888
I G+ DK
Sbjct: 530 RILGIHWSDK 539
>SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 38.7 bits (86), Expect = 0.012
Identities = 16/66 (24%), Positives = 35/66 (53%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDKXGI 897
R+ +S +++L V+ +++ +L+Y E W + H +N LR I G+ ++D+ +
Sbjct: 155 RRGISTETKLGVYRAIVLTSLLYACETWTVYQRHARKLNHFHTICLRKILGISVLDRANM 214
Query: 898 VX*GTV 915
T+
Sbjct: 215 FSINTM 220
>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2973
Score = 38.3 bits (85), Expect = 0.016
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E +N M LR
Sbjct: 2390 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSEPWTTYARQEKRLNTFHMRCLR 2449
Query: 859 SIAGMRLIDK 888
I G+ DK
Sbjct: 2450 RILGIHWSDK 2459
>SB_43044| Best HMM Match : zf-C2H2 (HMM E-Value=0.83)
Length = 226
Score = 37.9 bits (84), Expect = 0.022
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 739 SRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
++++V+ ++ TL+YGSE W E +N M LR I G+ DK
Sbjct: 18 TKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLRRILGIHWSDK 67
>SB_35827| Best HMM Match : zf-C2H2 (HMM E-Value=0.83)
Length = 223
Score = 37.9 bits (84), Expect = 0.022
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 739 SRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
++++V+ ++ TL+YGSE W E +N M LR I G+ DK
Sbjct: 18 TKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLRRILGIHWSDK 67
>SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)
Length = 754
Score = 37.9 bits (84), Expect = 0.022
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 739 SRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
++++V+ ++ TL+YGSE W E +N M LR I G+ DK
Sbjct: 18 TKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLRRILGIHWSDK 67
>SB_53437| Best HMM Match : DUF1126 (HMM E-Value=5.1)
Length = 92
Score = 37.9 bits (84), Expect = 0.022
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 739 SRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
++++V+ ++ TL+YGSE W E +N M LR I G+ DK
Sbjct: 18 TKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLRRILGIHWSDK 67
>SB_50765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 37.9 bits (84), Expect = 0.022
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ ++ ++++ V+ V + L+YG E W + H +N T LR + G+ DK
Sbjct: 203 RRGITTRTKIKVYRAVALTALLYGCESWTVYQRHSRKLNHFHTTCLRKLRGITWHDK 259
>SB_49894| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 226
Score = 37.9 bits (84), Expect = 0.022
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 739 SRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
++++V+ ++ TL+YGSE W E +N M LR I G+ DK
Sbjct: 18 TKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLRRILGIHWSDK 67
>SB_30624| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 406
Score = 37.9 bits (84), Expect = 0.022
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 739 SRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
++++V+ ++ TL+YGSE W E +N M LR I G+ DK
Sbjct: 18 TKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLRRILGIHWSDK 67
>SB_2346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 37.9 bits (84), Expect = 0.022
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 739 SRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
++++V+ ++ TL+YGSE W E +N M LR I G+ DK
Sbjct: 18 TKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLRRILGIHWSDK 67
>SB_27308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 37.5 bits (83), Expect = 0.028
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGS+ W E +N M LR
Sbjct: 114 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSKSWTTYARQEKRLNTFHMRCLR 173
Query: 859 SIAGMRLIDK 888
I G+ DK
Sbjct: 174 RILGIHWSDK 183
>SB_52890| Best HMM Match : PH (HMM E-Value=1e-06)
Length = 449
Score = 37.1 bits (82), Expect = 0.038
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 742 RLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
+++V+ ++ TL+YGSE W E +N M LR I G+ DK
Sbjct: 51 QITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLRRILGIHWSDK 99
>SB_3826| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 238
Score = 37.1 bits (82), Expect = 0.038
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E ++ M LR
Sbjct: 79 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLHTFHMRCLR 138
Query: 859 SIAGMRLIDK 888
I G+ DK
Sbjct: 139 RILGIHWSDK 148
>SB_44400| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 328
Score = 37.1 bits (82), Expect = 0.038
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E ++ M LR
Sbjct: 79 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLHTFHMRCLR 138
Query: 859 SIAGMRLIDK 888
I G+ DK
Sbjct: 139 RILGIHWSDK 148
>SB_47925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 36.7 bits (81), Expect = 0.050
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ +S K++L V+ +++ L+Y E W +H ++ M LR I +R DK
Sbjct: 88 RRGLSMKTKLKVYKAIVLPLLLYSCETWTVYSSHAKKLDRFHMNCLRKILQVRWQDK 144
>SB_42199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 36.7 bits (81), Expect = 0.050
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ +S K++L V+ +++ L+Y E W +H ++ M LR I +R DK
Sbjct: 88 RRGLSMKTKLKVYKAIVLPLLLYSCETWTVYSSHAKKLDRFHMNCLRKILQVRWQDK 144
>SB_8735| Best HMM Match : RVT_1 (HMM E-Value=2.00386e-43)
Length = 661
Score = 36.7 bits (81), Expect = 0.050
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E +N M LR
Sbjct: 459 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLR 518
Query: 859 SIAGMRLIDKXGIV 900
I G+ + G V
Sbjct: 519 RILGIHWLRWLGHV 532
>SB_59601| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 370
Score = 36.3 bits (80), Expect = 0.066
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E +N M LR
Sbjct: 162 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLR 221
Query: 859 SIAGM 873
I G+
Sbjct: 222 RILGI 226
>SB_34904| Best HMM Match : RVT_1 (HMM E-Value=1.1e-06)
Length = 530
Score = 35.9 bits (79), Expect = 0.087
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E +N M L
Sbjct: 302 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLC 361
Query: 859 SIAGMRLIDK 888
I G+ DK
Sbjct: 362 RILGIHWSDK 371
>SB_32967| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 35.9 bits (79), Expect = 0.087
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLID 885
R+ +S +++L V+ +++ +L+Y E W + H +N LR I G++ D
Sbjct: 214 RRGISTETKLGVYRAIVLTSLLYACETWTVYQRHARKLNHFHTICLRKILGIKWYD 269
>SB_4450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 410
Score = 35.9 bits (79), Expect = 0.087
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E +N M L
Sbjct: 182 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLC 241
Query: 859 SIAGMRLIDK 888
I G+ DK
Sbjct: 242 RILGIHWSDK 251
>SB_57364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 35.9 bits (79), Expect = 0.087
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLID 885
R+ +S +++L V+ +++ +L+Y E W + H +N LR I G++ D
Sbjct: 121 RRGISTETKLGVYRAIVLTSLLYACETWTVYQRHARKLNHFHTICLRKILGIKWYD 176
>SB_56454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 534
Score = 35.9 bits (79), Expect = 0.087
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLID 885
R+ +S +++L V+ +++ +L+Y E W + H +N LR I G++ D
Sbjct: 365 RRGISTETKLGVYRAIVLTSLLYACETWTVYQRHARKLNHFHTICLRKILGIKWYD 420
>SB_42893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 35.9 bits (79), Expect = 0.087
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E +N M LR
Sbjct: 592 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLR 651
Query: 859 SIAGMRLIDK 888
I + DK
Sbjct: 652 RIPRIHWSDK 661
>SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20)
Length = 906
Score = 35.9 bits (79), Expect = 0.087
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLID 885
R+ +S +++L V+ +++ +L+Y E W + H +N LR I G++ D
Sbjct: 665 RRGISTETKLGVYRAIVLTSLLYACETWTVYQRHARKLNHFHTICLRKILGIKWYD 720
>SB_24501| Best HMM Match : RVT_1 (HMM E-Value=4.2e-37)
Length = 565
Score = 35.9 bits (79), Expect = 0.087
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLID 885
R+ +S +++L V+ +++ +L+Y E W + H +N LR I G++ D
Sbjct: 360 RRGISTETKLGVYRAIVLTSLLYACETWTVYQRHARKLNHFHTICLRKILGIKWYD 415
>SB_6135| Best HMM Match : CSD (HMM E-Value=5.4)
Length = 254
Score = 35.9 bits (79), Expect = 0.087
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLID 885
R+ +S +++L V+ +++ +L+Y E W + H +N LR I G++ D
Sbjct: 55 RRGISTETKLGVYRAIVLTSLLYACETWTVYQRHARKLNHFHTICLRKILGIKWYD 110
>SB_56583| Best HMM Match : RNA_pol_Rpb7_N (HMM E-Value=5.6)
Length = 234
Score = 35.1 bits (77), Expect = 0.15
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 724 NVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
+VS K + V+ V++ L+YG+E W ++ ++A +M LR I + +DK
Sbjct: 112 HVSLKVKGKVYRAVVLSALVYGAETWTVYRSQVKTLHAYMMRHLREIMKITWMDK 166
>SB_28333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 34.7 bits (76), Expect = 0.20
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 724 NVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
+VS K + V+ V++ L+YG+E W ++ ++A +M LR I + +DK
Sbjct: 154 HVSLKVKGKVYRAVVLSALVYGAETWTVYRSQVKNLHAYMMRHLREIMKITWMDK 208
>SB_24941| Best HMM Match : DPRP (HMM E-Value=1)
Length = 354
Score = 34.7 bits (76), Expect = 0.20
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 724 NVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
+VS K + V+ V++ L+YG+E W ++ ++A +M LR I + +DK
Sbjct: 154 HVSLKVKGKVYRAVVLSALVYGAETWTVYRSQVKNLHAYMMRHLREIMKITWMDK 208
>SB_47792| Best HMM Match : RNA_pol_Rpb7_N (HMM E-Value=5.6)
Length = 255
Score = 34.7 bits (76), Expect = 0.20
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 724 NVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
+VS K + V+ V++ L+YG+E W ++ ++A +M LR I + +DK
Sbjct: 103 HVSLKVKGKVYRAVVLSALVYGAETWTVYRSQVKNLHAYMMRHLREIMKITWMDK 157
>SB_46702| Best HMM Match : LETM1 (HMM E-Value=5.5)
Length = 306
Score = 34.7 bits (76), Expect = 0.20
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 724 NVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
+VS K + V+ V++ L+YG+E W ++ ++A +M LR I + +DK
Sbjct: 154 HVSLKVKGKVYRAVVLSALVYGAETWTVYRSQVKNLHAYMMRHLREIMKITWMDK 208
>SB_29550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 464
Score = 34.7 bits (76), Expect = 0.20
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 724 NVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
+VS K + V+ V++ L+YG+E W ++ ++A +M LR I + +DK
Sbjct: 346 HVSLKVKGKVYRAVVLSALVYGAETWTVYRSQVKNLHAYMMRHLREIMKITWMDK 400
>SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)
Length = 1582
Score = 34.7 bits (76), Expect = 0.20
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 724 NVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
+VS K + V+ V++ L+YG+E W ++ ++A +M LR I + +DK
Sbjct: 1464 HVSLKVKGKVYRAVVLSALVYGAETWTVYRSQVKNLHAYMMRHLREIMKITWMDK 1518
>SB_13171| Best HMM Match : AT_hook (HMM E-Value=6.4)
Length = 188
Score = 34.7 bits (76), Expect = 0.20
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 724 NVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
+VS K + V+ V++ L+YG+E W ++ ++A +M LR I + +DK
Sbjct: 36 HVSLKVKGKVYRAVVLSALVYGAETWTVYRSQVKNLHAYMMRHLREIMKITWMDK 90
>SB_58494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 34.3 bits (75), Expect = 0.27
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E ++ M LR
Sbjct: 79 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLHTFHMRCLR 138
Query: 859 SIAGM 873
I G+
Sbjct: 139 RILGI 143
>SB_8964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 34.3 bits (75), Expect = 0.27
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ ++ TL+YGSE W E ++ M LR
Sbjct: 79 VTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLHTFHMRCLR 138
Query: 859 SIAGM 873
I G+
Sbjct: 139 RILGI 143
>SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1766
Score = 33.9 bits (74), Expect = 0.35
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 718 RQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
R+ + ++ V+ V++ TL+YGSE K H +N T LR I +R +K
Sbjct: 791 RRGIRTDPKIKVYRAVVLPTLLYGSEPGTIYKRHAMKLNHFHTTCLRKILNVRWQEK 847
>SB_19159| Best HMM Match : RVT_1 (HMM E-Value=0.00032)
Length = 426
Score = 33.5 bits (73), Expect = 0.46
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +1
Query: 724 NVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
+VS K + V+ V++ L+YG+E W ++ ++A +M L+ I + +DK
Sbjct: 274 HVSLKVKGKVYRAVVLSALVYGAETWTVYRSQVKNLHAYMMRHLKEIMKITWMDK 328
>SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 33.1 bits (72), Expect = 0.61
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 721 QNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
Q++ ++L V+ +++ +L+YG E W + H + LR+I +R D+
Sbjct: 428 QDIRLSTKLKVYNAIVLPSLLYGCETWTLYRRHIKKLGQFHTRSLRAIMRIRWQDR 483
>SB_53195| Best HMM Match : CaMBD (HMM E-Value=1.4)
Length = 83
Score = 33.1 bits (72), Expect = 0.61
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 721 QNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
Q++ ++L V+ +++ +L+YG E W + H + LR+I +R D+
Sbjct: 12 QDIRLSTKLKVYNAIVLPSLLYGCETWTLYRRHIKKLGQFHTRSLRAIMRIRWQDR 67
>SB_50753| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)
Length = 401
Score = 33.1 bits (72), Expect = 0.61
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 721 QNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
Q++ ++L V+ +++ +L+YG E W + H + LR+I +R D+
Sbjct: 199 QDIRLSTKLKVYNAIVLPSLLYGCETWTLYRRHIKKLEQFHTRSLRAIMRIRWQDR 254
>SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 33.1 bits (72), Expect = 0.61
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 721 QNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
Q++ ++L V+ +++ +L+YG E W + H + LR+I +R D+
Sbjct: 595 QDIRLSTKLKVYNAIVLPSLLYGCETWTLYRRHIKKLEQFHTRSLRAIMHIRWQDR 650
>SB_3152| Best HMM Match : RVT_1 (HMM E-Value=5.4006e-42)
Length = 717
Score = 32.7 bits (71), Expect = 0.81
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 679 ITTLFEALPSFMCRQNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLR 858
+TT+ + + ++ ++++V+ + TL+YGSE W E +N M LR
Sbjct: 654 VTTMTKLSSRVWENKKLTISTKITVYRACTLSTLLYGSESWTTYARQEKRLNTFHMRCLR 713
Query: 859 SI 864
I
Sbjct: 714 RI 715
>SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 498
Score = 32.3 bits (70), Expect = 1.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 992 LXPPXXXPKLIRXPFPNWNYILYPXXTVPYXTIPXLSI 879
+ PP P + P+ + Y+ P T+PY T+P L++
Sbjct: 333 VSPPYVSPPYVSPPYVSPPYVSPPYVTLPYVTLPYLTL 370
Score = 29.1 bits (62), Expect = 10.0
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 992 LXPPXXXPKLIRXPFPNWNYILYPXXTVPYXTIPXLSINLMPAI-LLXPVIT 840
+ PP P + P+ + Y+ P + PY T+P +++ + + + P +T
Sbjct: 328 VAPPYVSPPYVSPPYVSPPYVSPPYVSPPYVTLPYVTLPYLTLLYVATPYVT 379
>SB_36804| Best HMM Match : tRNA_int_endo (HMM E-Value=3.9)
Length = 229
Score = 32.3 bits (70), Expect = 1.1
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +1
Query: 721 QNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLID 885
Q++ ++L V+ +++ +L+YG E W + H + LR+I +R D
Sbjct: 116 QDIRLSTKLKVYNAIVLPSLLYGCETWTLYRRHIKKLGQFHTRSLRAIMRIRWQD 170
>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 406
Score = 32.3 bits (70), Expect = 1.1
Identities = 17/77 (22%), Positives = 33/77 (42%)
Frame = -2
Query: 1091 PSFSXXSXRVXXVPWAXLPAXXVPXPXXLLGEILXPPXXXPKLIRXPFPNWNYILYPXXT 912
PS+S S + P + + A +P L+ PP P +P++ + YP
Sbjct: 314 PSYSYPSYKHPSYPSSHIQASLLP----LIPHTSIPPTPHPTYKHSSYPSYKHPSYPSSH 369
Query: 911 VPYXTIPXLSINLMPAI 861
+ +P + +L+P +
Sbjct: 370 IQAFILPLIQASLLPLV 386
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 31.9 bits (69), Expect = 1.4
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -1
Query: 1188 PPPXGGXXPPPXRPPXFAFXSXPXXPPXVRDLPQL 1084
PPP GG PPP PP P PP +L L
Sbjct: 655 PPPGGGMFPPPPPPPPGGGVPGPPKPPPPGNLSTL 689
>SB_4898| Best HMM Match : CaMBD (HMM E-Value=1.2)
Length = 259
Score = 31.5 bits (68), Expect = 1.9
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +1
Query: 721 QNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
Q++ ++L V+ V++ +L+YG E W H + LR+I +R D+
Sbjct: 144 QDIHLSTKLKVYNAVVLPSLLYGCETWTLYCRHIKKLERFHTRSLRAIMRIRWQDR 199
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 31.1 bits (67), Expect = 2.5
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +1
Query: 721 QNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
Q++ ++L V+ +++ +L+YG E W H + LR+I +R D+
Sbjct: 3193 QDIRLSTKLKVYNAIVLPSLLYGCETWTLYCRHIKKLERFHTRSLRAIMRIRWQDR 3248
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 31.1 bits (67), Expect = 2.5
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -1
Query: 1188 PPPXGGXXPPPXRPPXFAFXSXPXXPPXVRDLP 1090
PPP GG PPP PP P PP + P
Sbjct: 355 PPPVGGAAPPPPPPP--PVGGPPPPPPPIEGRP 385
>SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)
Length = 1195
Score = 31.1 bits (67), Expect = 2.5
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +1
Query: 721 QNVSKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSIAGMRLIDK 888
Q++ ++L V+ +++ +L+YG E W H + LR+I +R D+
Sbjct: 963 QDIRLSTKLKVYNAIVLPSLLYGCETWTLYCRHIKKLERFHTRSLRAIMRIRWQDR 1018
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -1
Query: 1188 PPPXGGXXPPPXRPPXFAFXSXPXXPPXVRDL 1093
PPP GG PPP PP P PP +R L
Sbjct: 974 PPPPGGSAPPPPPPP-------PPPPPPMRKL 998
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 29.5 bits (63), Expect = 7.5
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +2
Query: 1046 PRGRXXPGXTXXKSWGKSRTXGGXXGXEXKAKXGGRXGGGXXPPXGGG 1189
PRG G + ++ G GG G GGR GGG GGG
Sbjct: 82 PRGERGAGGS--RAGGYRSGGGGYGGSSRGGYGGGRGGGGYGGGRGGG 127
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 29.5 bits (63), Expect = 7.5
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = -1
Query: 1188 PPPXGGXXPPPXRP-PXFAFXSXPXXPPXVRDLPQLFXXVXPGXXRP 1051
PPP PPP P P F S P PP +P + + P P
Sbjct: 289 PPPAVVTAPPPAPPLPNFTSPSPPPPPPLPPAMPAMDDLLPPEVLSP 335
>SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)
Length = 666
Score = 29.1 bits (62), Expect = 10.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 730 SKKSRLSVHPGVLVRTLMYGSECWVWQKNHESXINAVVMTGLRSI 864
S K++L ++ + L+YGSECW K I+A LR I
Sbjct: 510 SLKTKLRLYNSNVKSVLLYGSECWSIVKADMDKISAFHNVCLRKI 554
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,412,221
Number of Sequences: 59808
Number of extensions: 582759
Number of successful extensions: 3253
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 2805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3160
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5035506333
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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