Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_C11_e371_05.seq
(1545 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g01985.1 68417.m00265 expressed protein 32 0.88
At5g07540.1 68418.m00863 glycine-rich protein (GRP16) oleosin; g... 31 2.7
At4g08230.1 68417.m01358 glycine-rich protein 30 4.7
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 29 6.2
At2g10940.2 68415.m01168 protease inhibitor/seed storage/lipid t... 29 6.2
At2g10940.1 68415.m01167 protease inhibitor/seed storage/lipid t... 29 6.2
At3g12620.1 68416.m01571 protein phosphatase 2C family protein /... 29 8.2
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 32.3 bits (70), Expect = 0.88
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = +2
Query: 1028 GXXXGXPRGRXXPGXTXXKSWGKSRTXGGXXGXEXKAKXGGRXGGGXXPPXGGG 1189
G G G G + S G S GG G GG GGG GGG
Sbjct: 386 GGASGGASGGASGGASGGASGGASGGVGGAGGAGGSVGAGGGVGGGVGGGVGGG 439
>At5g07540.1 68418.m00863 glycine-rich protein (GRP16) oleosin;
glycine-rich protein 16 (GRP16) PMID:11431566
Length = 244
Score = 30.7 bits (66), Expect = 2.7
Identities = 19/55 (34%), Positives = 20/55 (36%)
Frame = +2
Query: 1025 PGXXXGXPRGRXXPGXTXXKSWGKSRTXGGXXGXEXKAKXGGRXGGGXXPPXGGG 1189
PG G G G + S G S GG G GG GGG GGG
Sbjct: 144 PGGASGGGPGGASGGASGGASGGAS---GGASGGASGGGPGGASGGGPGGASGGG 195
>At4g08230.1 68417.m01358 glycine-rich protein
Length = 113
Score = 29.9 bits (64), Expect = 4.7
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +2
Query: 1067 GXTXXKSWGKSRTXGGXXGXEXKAKXGGRXGGGXXPPXGG 1186
G K WG GG G GGR GG PP GG
Sbjct: 51 GSKPNKKWGGGMGGGGGGGGGSGGGGGGRGGG---PPRGG 87
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains leucine-rich
repeats, Pfam:PF00560; contains proline rich extensin
domains, INTERPRO:IPR002965
Length = 470
Score = 29.5 bits (63), Expect = 6.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 1188 PPPXGGXXPPPXRPPXFAFXSXPXXPP 1108
PPP PPP PP + + S P PP
Sbjct: 392 PPPPPPPPPPPPPPPPYVYPSPPPPPP 418
>At2g10940.2 68415.m01168 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
proline-rich cell wall protein [Medicago sativa]
GI:3818416; contains Pfam profile PF00234 Protease
inhibitor/seed storage/LTP family
Length = 291
Score = 29.5 bits (63), Expect = 6.2
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Frame = -2
Query: 1121 PSXPLXSGTCPSFSXXSXRVXXVPWAXLPAXXVPXPXXLLGEILXPPXXXPKLIRXPFPN 942
P P+ T P V +P + +P P + ++ PP PKL P P
Sbjct: 44 PKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKLPVPPVTIPKLPVPPVTVPKL---PVPP 100
Query: 941 WNYILYPXXTVPYXTIPXLSIN--LMPAILLXPVITTAL 831
+ P VP T+P L + +P + + PV L
Sbjct: 101 ---VTVPKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKL 136
>At2g10940.1 68415.m01167 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
proline-rich cell wall protein [Medicago sativa]
GI:3818416; contains Pfam profile PF00234 Protease
inhibitor/seed storage/LTP family
Length = 291
Score = 29.5 bits (63), Expect = 6.2
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Frame = -2
Query: 1121 PSXPLXSGTCPSFSXXSXRVXXVPWAXLPAXXVPXPXXLLGEILXPPXXXPKLIRXPFPN 942
P P+ T P V +P + +P P + ++ PP PKL P P
Sbjct: 44 PKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKLPVPPVTIPKLPVPPVTVPKL---PVPP 100
Query: 941 WNYILYPXXTVPYXTIPXLSIN--LMPAILLXPVITTAL 831
+ P VP T+P L + +P + + PV L
Sbjct: 101 ---VTVPKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKL 136
>At3g12620.1 68416.m01571 protein phosphatase 2C family protein /
PP2C family protein similar to Ser/Thr protein
phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis
thaliana]; similar to protein phosphatase 2C
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain;
Length = 385
Score = 29.1 bits (62), Expect = 8.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 631 NVTKTPRKVRRKCHDFITTLFEALPSFMCRQNVSKKSRLSVHPG 762
++ K R VRR HD IT + L S + ++ S++ LS+ G
Sbjct: 334 DLKKIDRGVRRHFHDDITVIVVFLDSHLVSRSTSRRPLLSISGG 377
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,783,621
Number of Sequences: 28952
Number of extensions: 401841
Number of successful extensions: 1393
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4144594560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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