Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C10_e363_06.seq
         (1502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.059
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.55 
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    30   0.72 
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    27   5.1  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   6.7  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   6.7  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    27   8.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 33.9 bits (74), Expect = 0.059
 Identities = 21/74 (28%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
 Frame = +3

Query: 1224 PPPPXXXGXXXXXXNPXLXPXXXAXGPXKKXRGXPXXXNGPXGTXGXPPPXXGXXXPAXX 1403
            PPP           N    P      P ++ RG P   NG   +   PPP       A  
Sbjct: 293  PPPSSRVSAAALAANKKRPPPPPP--PSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGS 350

Query: 1404 XPX-XKGXXXPPPP 1442
             P   +G   PPPP
Sbjct: 351  IPLPPQGRSAPPPP 364


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +1

Query: 1390 PRPXXXPXXKGXXXPPPPXGXGXXXPPXXXPXPP 1491
            P P   P   G   PPPP G     PP   P PP
Sbjct: 750  PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 1364 PXPXXGGXXPGPXXPXXERAXXPPPP 1441
            P P  GG  P P  P    A  PPPP
Sbjct: 754  PAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 604 LETDIS*TKLQTRCLKHFFKHTSNVNKERSILNDN 500
           LE  +    L T   KHF KHT N    +S+LN N
Sbjct: 412 LEKCVKLVSLDTANEKHFLKHTPNSAAHQSLLNTN 446


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 174 RWRHFFFLILFPQISIILIFYL 239
           RWRH FFL     I +++++Y+
Sbjct: 150 RWRHKFFLPAIAAIPLLVVYYV 171


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 605 ILR-RQYIINDLTIDYTSETLTVLK*LYAG 691
           +LR RQY+  +  IDY  E L+VLK L  G
Sbjct: 300 VLRLRQYLRGNACIDYLPELLSVLKTLLPG 329


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 658 FTRVINGQIIYNILSS*NLETDIS*TKLQTRCLKHFFKHTSNVNKE 521
           F R+ NG+ I+N+L   +L   ++   L   CLK   ++ +  +KE
Sbjct: 291 FLRINNGESIFNLLCIEDLHESVN---LDILCLKDILRNIAQSSKE 333


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 147

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 1420 GXXXPPPPXGXGXXXPP 1470
            G   PPPP G G   PP
Sbjct: 125  GYTAPPPPAGFGRGAPP 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,366,431
Number of Sequences: 5004
Number of extensions: 76869
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 840441776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)