Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_C10_e363_06.seq
(1502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 36 0.11
02_05_0686 - 30900748-30902167,30903442-30904742 36 0.11
03_01_0515 - 3864796-3865425 33 0.44
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 33 0.77
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 32 1.0
01_07_0082 - 40965947-40967023 32 1.4
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 4.1
11_06_0610 - 25449085-25453284 30 5.5
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 30 5.5
09_03_0101 + 12374771-12374926,12375505-12375731,12375816-123759... 29 9.5
02_04_0370 - 22427559-22427590,22427783-22427964,22428754-224289... 29 9.5
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 29 9.5
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 35.5 bits (78), Expect = 0.11
Identities = 42/128 (32%), Positives = 42/128 (32%), Gaps = 5/128 (3%)
Frame = -1
Query: 1481 GXXXGGXXXPXPXGGGGXXXPFXXGXXXGRGXXPPXWGXXPXGSXGAVXVXXXPPXFFXG 1302
G GG P P GGGG P G G PP G GA PP G
Sbjct: 89 GLPPGGGGAPGPLGGGGARPP-----GGGGGGGPPSLPPGAGGGGGA-----RPPAPGGG 138
Query: 1301 SXGXXXGXQXRVXXXXXPPXGXGXXGAXFXP---GRGCXXXXXP--GSXPXEPGRXXXPX 1137
G G RV G G GA P GRG P G PGR
Sbjct: 139 GGG---GAPRRVL------GGGGGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGG 189
Query: 1136 GGXXGPPR 1113
GG GP R
Sbjct: 190 GGGGGPGR 197
Score = 35.5 bits (78), Expect = 0.11
Identities = 32/112 (28%), Positives = 32/112 (28%), Gaps = 2/112 (1%)
Frame = -3
Query: 1455 APXXXGGGGXXALSXXGXXGPGXXPPXXGXGPPXFP--XGRXGXXXXPXXFLXVPRPGKX 1282
AP GGGG G GP PP G G P G G P L
Sbjct: 97 APGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLG------- 149
Query: 1281 VXXSGSXXXXXXXGXGXXGGLXXPXKGXPXXXXPGFPPXXTRPGXXPXRGXG 1126
G G G G L P G PG P G P R G
Sbjct: 150 -GGGGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPG 200
Score = 31.9 bits (69), Expect = 1.4
Identities = 38/129 (29%), Positives = 38/129 (29%), Gaps = 6/129 (4%)
Frame = -1
Query: 1490 GGXGXXXGGXXXPXPXGGGGXXXPFXXGXXXGRGXXPPXWGXXPXGSXGAVXVXXXPPXF 1311
G G GG P GGGG G G G PP P G G P
Sbjct: 96 GAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPP----APGGGGGG----GAPRRV 147
Query: 1310 FXGSXGXXXGXQXRVXXXXXPPXGXGXXGAXFXPGRGCXXXXXPGSXP------XEPGRX 1149
G G G R P G G GA P G PG P PGR
Sbjct: 148 LGGGGG--GGALAR-------PPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRA 198
Query: 1148 XXPXGGXXG 1122
GG G
Sbjct: 199 PGGGGGGGG 207
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 35.5 bits (78), Expect = 0.11
Identities = 27/100 (27%), Positives = 28/100 (28%)
Frame = +3
Query: 1167 RXGTRXPXXXAXPSXGKXGPPPPXXXGXXXXXXNPXLXPXXXAXGPXKKXRGXPXXXNGP 1346
R P A + PPPP P P P K P GP
Sbjct: 294 RESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGP 353
Query: 1347 XGTXGXPPPXXGXXXPAXXXPXXKGXXXPPPPXXXGPXXP 1466
PPP G P P K PPPP G P
Sbjct: 354 PP----PPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRP 389
>03_01_0515 - 3864796-3865425
Length = 209
Score = 33.5 bits (73), Expect = 0.44
Identities = 21/75 (28%), Positives = 21/75 (28%), Gaps = 1/75 (1%)
Frame = +3
Query: 1269 PXLXPXXXAXGPXKKXRGXPX-XXNGPXGTXGXPPPXXGXXXPAXXXPXXKGXXXPPPPX 1445
P P A P P P T PPP G P P PPPP
Sbjct: 29 PAPSPEAEASPPSPPTEASPPPLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPL 88
Query: 1446 XXGPXXPXXXXPXXP 1490
P P P P
Sbjct: 89 PPPPPPPAASPPPPP 103
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 32.7 bits (71), Expect = 0.77
Identities = 26/105 (24%), Positives = 26/105 (24%), Gaps = 1/105 (0%)
Frame = +1
Query: 1180 GXXXXXXPLPGXXKAPXXPXPXGGXXXXXTRXXNPFXXPXDP*KXXG-GXXXTXTAPXEP 1356
G P P P P P P P P G G P P
Sbjct: 269 GGQVPAAPPPPAGPPPPAPPPLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHP 328
Query: 1357 WGXXPXXGGXXPRPXXXPXXKGXXXPPPPXGXGXXXPPXXXPXPP 1491
P P P G PPPP PP P PP
Sbjct: 329 --AAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPP 371
Score = 32.3 bits (70), Expect = 1.0
Identities = 20/77 (25%), Positives = 20/77 (25%)
Frame = +3
Query: 1224 PPPPXXXGXXXXXXNPXLXPXXXAXGPXKKXRGXPXXXNGPXGTXGXPPPXXGXXXPAXX 1403
PPPP P P P G PPP PA
Sbjct: 302 PPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAP 361
Query: 1404 XPXXKGXXXPPPPXXXG 1454
P G PPPP G
Sbjct: 362 RPPGPGPGPPPPPGAAG 378
Score = 29.5 bits (63), Expect = 7.2
Identities = 24/84 (28%), Positives = 25/84 (29%), Gaps = 8/84 (9%)
Frame = +2
Query: 1211 GXXRPPXXPXPXXXXXXXEPEXXTXXPGRGTXKKXXGXXXXPX--RPXGNXGGPXP---- 1372
G PP P P G G+ P RP G GP P
Sbjct: 317 GTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGA 376
Query: 1373 --XXGGXXPGPXXPXXERAXXPPP 1438
GG P P P RA PPP
Sbjct: 377 AGRGGGGPPPPALPGGPRARGPPP 400
Score = 29.1 bits (62), Expect = 9.5
Identities = 21/86 (24%), Positives = 22/86 (25%)
Frame = +3
Query: 1197 AXPSXGKXGPPPPXXXGXXXXXXNPXLXPXXXAXGPXKKXRGXPXXXNGPXGTXGXPPPX 1376
A G PPPP P P G P P PP
Sbjct: 312 AGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAG------SGPPPPPPPAAPAAPRPPG 365
Query: 1377 XGXXXPAXXXPXXKGXXXPPPPXXXG 1454
G P +G PPPP G
Sbjct: 366 PGPGPPPPPGAAGRGGGGPPPPALPG 391
>01_06_0565 + 30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 32.3 bits (70), Expect = 1.0
Identities = 29/120 (24%), Positives = 31/120 (25%), Gaps = 8/120 (6%)
Frame = +1
Query: 1156 PGSXGXEPGXXXXXXPLPGXXKAPXXPXPXGGXXXXXTRXXNPFXXPXDP*KXXGGXXXT 1335
PG G P P +P P GG + P GG T
Sbjct: 169 PGGGGGYSPTPSDTPPSPSSDTSPTTPGGGGGYTPTPSDAPPSPSSDTSPTTPGGGGGYT 228
Query: 1336 XT---APXEPWG-XXPXX----GGXXPRPXXXPXXKGXXXPPPPXGXGXXXPPXXXPXPP 1491
T AP P P GG P P P P G G P PP
Sbjct: 229 PTPSDAPPSPSSDTSPTTPGGGGGYTPTPSDTPPSPSSGSSPTTPGGGGGYTPTPSDTPP 288
Score = 31.1 bits (67), Expect = 2.4
Identities = 31/124 (25%), Positives = 34/124 (27%), Gaps = 1/124 (0%)
Frame = +1
Query: 1123 PXXPPXGXX-XRPGSXGXEPGXXXXXXPLPGXXKAPXXPXPXGGXXXXXTRXXNPFXXPX 1299
P P G PG G P P +P P GG T P P
Sbjct: 105 PPSPSIGTSPTTPGGGGGYTPTPSDTPPSPSSDTSPSTPG--GGCSSSPT----PCDAPP 158
Query: 1300 DP*KXXGGXXXTXTAPXEPWGXXPXXGGXXPRPXXXPXXKGXXXPPPPXGXGXXXPPXXX 1479
P + T+P P G GG P P P P G G P
Sbjct: 159 SP--------SSDTSPTTPGGG----GGYSPTPSDTPPSPSSDTSPTTPGGGGGYTPTPS 206
Query: 1480 PXPP 1491
PP
Sbjct: 207 DAPP 210
Score = 29.5 bits (63), Expect = 7.2
Identities = 24/97 (24%), Positives = 26/97 (26%), Gaps = 3/97 (3%)
Frame = +2
Query: 1127 PXPLXGXXPGRVXXGGNPGXXXXGXPFXGXXRPPXXPXPXXXXXXXEPEXXTXXPGRGTX 1306
P P G P G +P G P P + PG G
Sbjct: 459 PAPTIGNVPPSPSSGTSPSTPGGGCS--------SSPTPCDAPPSPSSDTSPTTPGGGYY 510
Query: 1307 KKXXGXXXXPXRPXGNXGG---PXPXXGGXXPGPXXP 1408
P P G GG P P GG P P P
Sbjct: 511 PPTPSIGTSPSTP-GTGGGYYPPSPSTGGYTPTPDVP 546
>01_07_0082 - 40965947-40967023
Length = 358
Score = 31.9 bits (69), Expect = 1.4
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +3
Query: 1344 PXGTXGXPPPXXGXXXPAXXXPXXKGXXXPPPPXXXG 1454
P GT PPP G PA P G PPPP G
Sbjct: 251 PYGTA--PPPQYGYGYPAQPPPPQAGYGYPPPPPQAG 285
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.3 bits (65), Expect = 4.1
Identities = 26/90 (28%), Positives = 27/90 (30%), Gaps = 2/90 (2%)
Frame = +3
Query: 1203 PSXGKXGPPPPXXXGXXXXXXNPXLXPXXXAXGPXKKXRGXPXXXNGPXGTXGXPPP--X 1376
PS G PPPP G P P G + P P G G PPP
Sbjct: 1102 PSIGAGAPPPPPPPGGITGVPPP---PPIGGLGGHQAPPAPPL----PEGIGGVPPPPPV 1154
Query: 1377 XGXXXPAXXXPXXKGXXXPPPPXXXGPXXP 1466
G P P PPP G P
Sbjct: 1155 GGLGGPPAPPPPAGFRGGTPPPNAHGGVAP 1184
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.9 bits (64), Expect = 5.5
Identities = 21/94 (22%), Positives = 25/94 (26%), Gaps = 1/94 (1%)
Frame = +3
Query: 1203 PSXGKXGPPPPXXXGXXXXXXNPXLXPXXXAXGPXKKXRGXPXXXNGPXGTXGXPPPXXG 1382
P PPPP G P P P + + P G PP
Sbjct: 621 PESKASSPPPPAPEGHTPSP--PESTPPSEKSPPTPESKASSPPPPTPEGHTPSPPKSTP 678
Query: 1383 XXXPAXXXPXXKGXXXPPP-PXXXGPXXPXXXXP 1481
+ P + PPP P P P P
Sbjct: 679 PTEKSPPTPESESSSPPPPAPEGHMPSPPKSTPP 712
Score = 29.5 bits (63), Expect = 7.2
Identities = 21/94 (22%), Positives = 24/94 (25%), Gaps = 1/94 (1%)
Frame = +3
Query: 1203 PSXGKXGPPPPXXXGXXXXXXNPXLXPXXXAXGPXKKXRGXPXXXNGPXGTXGXPPPXXG 1382
P PPPP G P P P + P G PP
Sbjct: 654 PESKASSPPPPTPEGHTPSP--PKSTPPTEKSPPTPESESSSPPPPAPEGHMPSPPKSTP 711
Query: 1383 XXXPAXXXPXXKGXXXPPP-PXXXGPXXPXXXXP 1481
+ P + PPP P P P P
Sbjct: 712 PVEKSPPTPESEASSPPPPAPEGHTPSPPKSSPP 745
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 29.9 bits (64), Expect = 5.5
Identities = 33/132 (25%), Positives = 35/132 (26%), Gaps = 7/132 (5%)
Frame = +1
Query: 1117 GGPXXPPXGXXXRPGSXGXEPGXXXXXXPLPGXXKAPXXPXPXGGXXXXXTRXXNPFXXP 1296
G P PP G P G P P PG P P + P
Sbjct: 421 GAPPPPPPGSYA-PVPWGQPPPYASYPPPPPGSSM--YNPPPPAPGQATPPPYGVQYAPP 477
Query: 1297 XDP*KXXGGXXXTXTAPXEPWGXXPXXGGXXPRPXXXPX--XKGX-----XXPPPPXGXG 1455
P G T A P G P G +P P G PPPP G
Sbjct: 478 PAPIPPPGTAPSTDGAQNYPPGVTPPSSGAPTQPVPAPVYGTSGAPNAPPMYPPPPYGYA 537
Query: 1456 XXXPPXXXPXPP 1491
P PP
Sbjct: 538 SYYPSVTPVQPP 549
>09_03_0101 +
12374771-12374926,12375505-12375731,12375816-12375971,
12376066-12376251,12376407-12376591,12376984-12376991
Length = 305
Score = 29.1 bits (62), Expect = 9.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 455 PLYYYLFHFLLISFIIVIQYGPFLVY 532
P+YYY+F+ LL S +++ Y L+Y
Sbjct: 259 PIYYYVFNSLLFSLLVLHIYWWVLIY 284
>02_04_0370 -
22427559-22427590,22427783-22427964,22428754-22428939,
22429125-22429280,22429366-22429589,22430933-22430968,
22431390-22431539
Length = 321
Score = 29.1 bits (62), Expect = 9.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 455 PLYYYLFHFLLISFIIVIQYGPFLVY 532
P+YYY+F+ LL S +++ Y L+Y
Sbjct: 268 PIYYYVFNSLLFSLLVLHIYWWVLIY 293
>02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 29.1 bits (62), Expect = 9.5
Identities = 19/88 (21%), Positives = 23/88 (26%), Gaps = 1/88 (1%)
Frame = +3
Query: 1197 AXPSXGKXGPPPPXXXGXXXXXXNPXLXPXXXAXGPXKKXRGXPXXXNGPXGTXGXPPPX 1376
+ PS G G G P + P P + P G PPP
Sbjct: 554 SAPSYGAQGVAGQASPGQQTSTPAAGSHPGYSSQPPTSAASSYPVQGSAPQSGYGAPPPQ 613
Query: 1377 XG-XXXPAXXXPXXKGXXXPPPPXXXGP 1457
G P +G PP P
Sbjct: 614 TGYGTQPQPQGGYSQGSYGAPPQGQKAP 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,847,529
Number of Sequences: 37544
Number of extensions: 664315
Number of successful extensions: 2033
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1746
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4814874820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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