Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_C10_e363_06.seq
(1502 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 40 0.007
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 36 0.064
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 36 0.064
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.19
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.45
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.78
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 32 1.0
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 32 1.4
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 30 4.2
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.6
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 29 9.6
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 29 9.6
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 39.5 bits (88), Expect = 0.007
Identities = 27/84 (32%), Positives = 29/84 (34%)
Frame = +3
Query: 1203 PSXGKXGPPPPXXXGXXXXXXNPXLXPXXXAXGPXKKXRGXPXXXNGPXGTXGXPPPXXG 1382
PS G PPPP G P P + P RG P P + G PP G
Sbjct: 309 PSRGSAPPPPPARMGTAP----PPPPPSRSSQRPPPPSRGAP-----PPPSMGMAPPPVG 359
Query: 1383 XXXPAXXXPXXKGXXXPPPPXXXG 1454
P P G PPPP G
Sbjct: 360 GAAPPPPPPPPVGGPPPPPPPIEG 383
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 36.3 bits (80), Expect = 0.064
Identities = 27/103 (26%), Positives = 30/103 (29%), Gaps = 1/103 (0%)
Frame = +3
Query: 1176 TRXPXXXAXPSXGKXGPPPPXXXGXXXXXXNPXLXPXXXAXG-PXKKXRGXPXXXNGPXG 1352
T P + P PPPP G + P G P P N
Sbjct: 131 TAPPPKNSSPPPPFGAPPPPDRGGQLAKKPSQGSFPPPPPMGKPPPPSGNKPTFGNSRTS 190
Query: 1353 TXGXPPPXXGXXXPAXXXPXXKGXXXPPPPXXXGPXXPXXXXP 1481
T G PPP A P + PPPP GP P
Sbjct: 191 TNGPPPPPHSRHGSA-PPPPERSSGPPPPPPGRGPSQRSLAPP 232
Score = 31.1 bits (67), Expect = 2.4
Identities = 24/96 (25%), Positives = 25/96 (26%)
Frame = +3
Query: 1203 PSXGKXGPPPPXXXGXXXXXXNPXLXPXXXAXGPXKKXRGXPXXXNGPXGTXGXPPPXXG 1382
P G PPPP G P P R P PPP
Sbjct: 273 PKRGSSNPPPPPTRG-------PPSNSFTTQGPPLPPSRDQAPAPPPPLNATPPPPPPSR 325
Query: 1383 XXXPAXXXPXXKGXXXPPPPXXXGPXXPXXXXPXXP 1490
P P +G PPPP P P P
Sbjct: 326 DQVPLPPPPL-RGQIAPPPPPISKPPTSTRSAPPPP 360
Score = 30.7 bits (66), Expect = 3.2
Identities = 22/78 (28%), Positives = 23/78 (29%)
Frame = +3
Query: 1224 PPPPXXXGXXXXXXNPXLXPXXXAXGPXKKXRGXPXXXNGPXGTXGXPPPXXGXXXPAXX 1403
PPPP P P P GP T G PP P
Sbjct: 217 PPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPPPPMRGP--TSGGEPPPPKNAPP--- 271
Query: 1404 XPXXKGXXXPPPPXXXGP 1457
P +G PPPP GP
Sbjct: 272 -PPKRGSSNPPPPPTRGP 288
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 36.3 bits (80), Expect = 0.064
Identities = 27/103 (26%), Positives = 30/103 (29%), Gaps = 1/103 (0%)
Frame = +3
Query: 1176 TRXPXXXAXPSXGKXGPPPPXXXGXXXXXXNPXLXPXXXAXG-PXKKXRGXPXXXNGPXG 1352
T P + P PPPP G + P G P P N
Sbjct: 43 TAPPPKNSSPPPPFGAPPPPDRGGQLAKKPSQGSFPPPPPMGKPPPPSGNKPTFGNSRTS 102
Query: 1353 TXGXPPPXXGXXXPAXXXPXXKGXXXPPPPXXXGPXXPXXXXP 1481
T G PPP A P + PPPP GP P
Sbjct: 103 TNGPPPPPHSRHGSA-PPPPERSSGPPPPPPGRGPSQRSLAPP 144
Score = 31.1 bits (67), Expect = 2.4
Identities = 24/96 (25%), Positives = 25/96 (26%)
Frame = +3
Query: 1203 PSXGKXGPPPPXXXGXXXXXXNPXLXPXXXAXGPXKKXRGXPXXXNGPXGTXGXPPPXXG 1382
P G PPPP G P P R P PPP
Sbjct: 185 PKRGSSNPPPPPTRG-------PPSNSFTTQGPPLPPSRDQAPAPPPPLNATPPPPPPSR 237
Query: 1383 XXXPAXXXPXXKGXXXPPPPXXXGPXXPXXXXPXXP 1490
P P +G PPPP P P P
Sbjct: 238 DQVPLPPPPL-RGQIAPPPPPISKPPTSTRSAPPPP 272
Score = 30.7 bits (66), Expect = 3.2
Identities = 22/78 (28%), Positives = 23/78 (29%)
Frame = +3
Query: 1224 PPPPXXXGXXXXXXNPXLXPXXXAXGPXKKXRGXPXXXNGPXGTXGXPPPXXGXXXPAXX 1403
PPPP P P P GP T G PP P
Sbjct: 129 PPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPPPPMRGP--TSGGEPPPPKNAPP--- 183
Query: 1404 XPXXKGXXXPPPPXXXGP 1457
P +G PPPP GP
Sbjct: 184 -PPKRGSSNPPPPPTRGP 200
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 34.7 bits (76), Expect = 0.19
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = +2
Query: 1334 PXRPXGNXGGPXPXXGGXXPGPXXPXXERAXXPPPPXXXGAXXXXXXXXPXPP 1492
P P GN P P GG P P A PPPP A P PP
Sbjct: 923 PPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPP 975
Score = 29.5 bits (63), Expect = 7.3
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Frame = +1
Query: 1378 GGXXPRPXXXPXXKGXXXPPPPXGXGXXXPP---XXXPXPP 1491
GG P P P PPPP G PP P PP
Sbjct: 916 GGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPP 956
>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 33.5 bits (73), Expect = 0.45
Identities = 31/96 (32%), Positives = 33/96 (34%), Gaps = 1/96 (1%)
Frame = +2
Query: 1124 RPXPLXGXXPGRVXXGGNPGXXXXGXPFXGXXRP-PXXPXPXXXXXXXEPEXXTXXPGRG 1300
RP P G P + G NPG P G RP P P P PG G
Sbjct: 458 RPNPGLGG-PNQGLEGPNPGFVR---PNPGLGRPNPGLGGPNPGFGGPNPGLGGPNPGLG 513
Query: 1301 TXKKXXGXXXXPXRPXGNXGGPXPXXGGXXPGPXXP 1408
+ G RP GGP P GG PG P
Sbjct: 514 RPNQGFG------RPDPGLGGPNPGLGGPNPGLGGP 543
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 32.7 bits (71), Expect = 0.78
Identities = 28/100 (28%), Positives = 30/100 (30%), Gaps = 3/100 (3%)
Frame = +2
Query: 1151 PGRVXXGGNP---GXXXXGXPFXGXXRPPXXPXPXXXXXXXEPEXXTXXPGRGTXKKXXG 1321
PG GG P G P G + P P P G G G
Sbjct: 506 PGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQ-GWGQPPPGAG 564
Query: 1322 XXXXPXRPXGNXGGPXPXXGGXXPGPXXPXXERAXXPPPP 1441
P P GGP P G GP P + PPPP
Sbjct: 565 QGGGPPPPGAGQGGP-PPPGAGQEGPPPPGAGQGGGPPPP 603
Score = 29.5 bits (63), Expect = 7.3
Identities = 20/70 (28%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Frame = +2
Query: 1235 PXPXXXXXXXEPEXXTXXPGRGTXKKXXGXXXXPXRP-XGNXGGPXPXXGGXXPGPXXPX 1411
P P P G G G P P G GGP P G G P
Sbjct: 503 PPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPG 562
Query: 1412 XERAXXPPPP 1441
+ PPPP
Sbjct: 563 AGQGGGPPPP 572
Score = 29.1 bits (62), Expect = 9.6
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = +2
Query: 1292 GRGTXKKXXGXXXXPXRP-XGNXGGPXPXXGGXXPGPXXPXXERAXXPPPP 1441
G G G P P G GGP P G G P + PPPP
Sbjct: 489 GWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPP 539
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 32.3 bits (70), Expect = 1.0
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +1
Query: 1378 GGXXPRPXXXPXXKGXXXPPPPXGXGXXXPPXXXPXPP 1491
GG P P P PPPP G PP P PP
Sbjct: 286 GGGAPVPPPPPADGSAPAPPPPPPPGGAPPPPPPPPPP 323
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Frame = +2
Query: 1334 PXRPXGNXGG-----PXPXXGGXXPGPXXPXXERAXXPPPPXXXG 1453
P P G GG P P GG P P P A PPPP G
Sbjct: 665 PPPPGGQAGGAPPPPPPPLPGGAAPPPPPPIGGGAPPPPPPGFGG 709
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = +3
Query: 1344 PXGTXGXPPPXXGXXXPAXXXPXXKGXXXPPPPXXXGPXXPXXXXP 1481
P G G PPP G P P PPPP GP P P
Sbjct: 462 PGGMRGMPPPPMGMYPPPRGFP--PPPFGPPPPFYRGPPPPRGMPP 505
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 30.3 bits (65), Expect = 4.2
Identities = 21/84 (25%), Positives = 24/84 (28%)
Frame = +3
Query: 1203 PSXGKXGPPPPXXXGXXXXXXNPXLXPXXXAXGPXKKXRGXPXXXNGPXGTXGXPPPXXG 1382
P+ G PPPP P + P P P P G PPP
Sbjct: 146 PATGGPPPPPPIAPATGGPPPPPPIAPAATVPAPA-----VPLAAASPPPPSGGPPPPPP 200
Query: 1383 XXXPAXXXPXXKGXXXPPPPXXXG 1454
P P + PPP G
Sbjct: 201 PPPPPPPPPILELAAPPPPGSVLG 224
Score = 29.9 bits (64), Expect = 5.5
Identities = 25/102 (24%), Positives = 26/102 (25%)
Frame = +3
Query: 1185 PXXXAXPSXGKXGPPPPXXXGXXXXXXNPXLXPXXXAXGPXKKXRGXPXXXNGPXGTXGX 1364
P PS PPPP P + P P P G
Sbjct: 114 PRAPETPSQAPSPPPPPTSPATRAPPPPPPIAPATGGPPP------PPPIAPATGGPPPP 167
Query: 1365 PPPXXGXXXPAXXXPXXKGXXXPPPPXXXGPXXPXXXXPXXP 1490
PP PA P PPPP P P P P
Sbjct: 168 PPIAPAATVPAPAVPL--AAASPPPPSGGPPPPPPPPPPPPP 207
Score = 29.5 bits (63), Expect = 7.3
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +1
Query: 1342 APXEPWGXXPXXGGXXPRPXXXPXXKGXXXPPPPXGXGXXXPPXXXP 1482
AP P P GG P P P G PPPP P P
Sbjct: 137 APPPPPPIAPATGGPPPPPPIAPAT-GGPPPPPPIAPAATVPAPAVP 182
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 29.1 bits (62), Expect = 9.6
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +3
Query: 1341 GPXGTXGXPPPXXGXXXPAXXXPXXKGXXXPPPPXXXGPXXP 1466
GP G G P P P P G PP P GP P
Sbjct: 894 GPPGLAGSPGPRGPNGEPGD--PGMDGDKGPPGPVDAGPRGP 933
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 29.1 bits (62), Expect = 9.6
Identities = 20/58 (34%), Positives = 20/58 (34%)
Frame = -1
Query: 1490 GGXGXXXGGXXXPXPXGGGGXXXPFXXGXXXGRGXXPPXWGXXPXGSXGAVXVXXXPP 1317
GG G GG GGGG G RG PP P S V V PP
Sbjct: 337 GGSGRGGGGGGGGGGGGGGGGGGRGGGGGFSSRGRGPP-----PRRSDFRVQVSGLPP 389
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 29.1 bits (62), Expect = 9.6
Identities = 19/78 (24%), Positives = 24/78 (30%)
Frame = +2
Query: 1223 PPXXPXPXXXXXXXEPEXXTXXPGRGTXKKXXGXXXXPXRPXGNXGGPXPXXGGXXPGPX 1402
PP P P + PG + G P G GGP P PGP
Sbjct: 103 PPGDPGPKGNKGQPGAQGRPGAPGDRGERGSAGSDG----PKGEAGGPGPLGPIGPPGPI 158
Query: 1403 XPXXERAXXPPPPXXXGA 1456
+ + P P G+
Sbjct: 159 LDYNDTSGAGPDPILIGS 176
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,869,687
Number of Sequences: 59808
Number of extensions: 612391
Number of successful extensions: 2911
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2703
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4871177455
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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