Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_C10_e363_06.seq
(1502 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 32 0.85
At2g44790.1 68415.m05574 uclacyanin II strong similarity to ucla... 31 1.5
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 30 4.5
At1g61080.1 68414.m06877 proline-rich family protein 30 4.5
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 29 6.0
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 29 6.0
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 29 7.9
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 32.3 bits (70), Expect = 0.85
Identities = 23/110 (20%), Positives = 28/110 (25%), Gaps = 4/110 (3%)
Frame = +3
Query: 1173 GTRXPXXXAXPSXGKXGPPPPXXXGXXXXXXNPXLXPXXXAXGPXKKXR----GXPXXXN 1340
G P P+ G P P +P + P P G P +
Sbjct: 491 GGSPPSSPTTPTPGGSPPSSPTTPSPGGSPPSPSISPSPPITVPSPPSTPTSPGSPPSPS 550
Query: 1341 GPXGTXGXPPPXXGXXXPAXXXPXXKGXXXPPPPXXXGPXXPXXXXPXXP 1490
P + P P P P P P GP P P P
Sbjct: 551 SPTPSSPIPSPPTPSTPPTPISPGQNSPPIIPSPPFTGPSPPSSPSPPLP 600
>At2g44790.1 68415.m05574 uclacyanin II strong similarity to
uclacyanin II GI:3399769 from [Arabidopsis thaliana];
contains Pfam profile PF02298: Plastocyanin-like domain;
identical to cDNA uclacyanin II GI:3399768
Length = 202
Score = 31.5 bits (68), Expect = 1.5
Identities = 16/50 (32%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Frame = +3
Query: 1320 GXPXXXNGPXGTXGXP-----PPXXGXXXPAXXXPXXKGXXXPPPPXXXG 1454
G P P T G P PP G P P PPPP G
Sbjct: 130 GPPATPTPPSSTPGTPTTPESPPSGGSPTPTTPTPGAGSTSPPPPPKASG 179
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 29.9 bits (64), Expect = 4.5
Identities = 21/63 (33%), Positives = 22/63 (34%)
Frame = +1
Query: 1282 PFXXPXDP*KXXGGXXXTXTAPXEPWGXXPXXGGXXPRPXXXPXXKGXXXPPPPXGXGXX 1461
P P P + GG T P P GG P P P G PPPP G
Sbjct: 648 PPRVPRPPPRSAGGGKSTNLPSARP----PLPGGGPPPP---PPPPGGGPPPPPGGGPPP 700
Query: 1462 XPP 1470
PP
Sbjct: 701 PPP 703
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 29.9 bits (64), Expect = 4.5
Identities = 28/116 (24%), Positives = 28/116 (24%)
Frame = +1
Query: 1123 PXXPPXGXXXRPGSXGXEPGXXXXXXPLPGXXKAPXXPXPXGGXXXXXTRXXNPFXXPXD 1302
P PP G P PG P P P P P P
Sbjct: 538 PPPPPPGTAAAPPPPPPPPGTQAAPPPPPPPPMQNRAPSPPPMPMGNSGSGGPP--PPPP 595
Query: 1303 P*KXXGGXXXTXTAPXEPWGXXPXXGGXXPRPXXXPXXKGXXXPPPPXGXGXXXPP 1470
P G T P P G P P G PPPP G P
Sbjct: 596 PMPLANGA--TPPPPPPPMAMANGAAGPPPPPPRMGMANGAAGPPPPPGAARSLRP 649
>At5g54650.2 68418.m06805 formin homology 2 domain-containing protein
/ FH2 domain-containing protein contains formin homology
2 domain, Pfam:PF02181
Length = 900
Score = 29.5 bits (63), Expect = 6.0
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +3
Query: 1326 PXXXNGPXGTXGXPPPXXGXXXPAXXXPXXKGXXXPPPPXXXGPXXP 1466
P P PPP G P P KG PPPP GP P
Sbjct: 380 PSSAGPPRPPPPAPPPGSGGPKPPPP-PGPKGPR-PPPPMSLGPKAP 424
>At5g54650.1 68418.m06804 formin homology 2 domain-containing protein
/ FH2 domain-containing protein contains formin homology
2 domain, Pfam:PF02181
Length = 900
Score = 29.5 bits (63), Expect = 6.0
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +3
Query: 1326 PXXXNGPXGTXGXPPPXXGXXXPAXXXPXXKGXXXPPPPXXXGPXXP 1466
P P PPP G P P KG PPPP GP P
Sbjct: 380 PSSAGPPRPPPPAPPPGSGGPKPPPP-PGPKGPR-PPPPMSLGPKAP 424
>At1g59910.1 68414.m06749 formin homology 2 domain-containing protein
/ FH2 domain-containing protein contains formin homology
2 domain, Pfam:PF02128
Length = 929
Score = 29.1 bits (62), Expect = 7.9
Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Frame = +3
Query: 1326 PXXXNGPXG-TXGXPPPXXGXXXPAXXXPXXKGXXXPPPP 1442
P GP T PPP P P KG PPPP
Sbjct: 372 PPAPPGPANQTSPPPPPPPSAAAPPPPPPPKKGPAAPPPP 411
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,047,725
Number of Sequences: 28952
Number of extensions: 475268
Number of successful extensions: 1552
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4009654272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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