Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C09_e355_05.seq
         (1516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               318   1e-86
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   3.2  
SB_51561| Best HMM Match : MHC_I_C (HMM E-Value=3.6e-05)               30   4.2  
SB_34021| Best HMM Match : Zip (HMM E-Value=0)                         30   4.2  
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   30   5.6  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  318 bits (780), Expect = 1e-86
 Identities = 145/206 (70%), Positives = 168/206 (81%)
 Frame = +3

Query: 129 MSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 308
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR+ DG ++IN+++TWEK   
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 309 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 488
                   E+PADV VIS+R +GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61  AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120

Query: 489 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 668
           LLIV DP  DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K  HSIGLM+WLLAR
Sbjct: 121 LLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAR 180

Query: 669 EVLRLRGVLSRDQRWDVVVDLFFYRD 746
           EVLR+RG +SR   W+++ DL+FYRD
Sbjct: 181 EVLRMRGSISRALPWEIMPDLYFYRD 206


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 501 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 596
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_51561| Best HMM Match : MHC_I_C (HMM E-Value=3.6e-05)
          Length = 431

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +1

Query: 733 SSIVTLKRVRRKSNKLRNRLSSLPKWKRRRQFMRNGLRMLEPVXI 867
           SS V    +R+ ++   N L+S+P   RR++ +R    ++EPV I
Sbjct: 6   SSTVRPFFIRQPASDTENTLTSVPLSTRRKKLVRESWELIEPVKI 50


>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
          Length = 808

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -2

Query: 762 SHSLQGHDRRTSQRQHPNAGHD*EHHGVSILH 667
           SH   GH        H N GH  E+HG S  H
Sbjct: 316 SHENHGHSHENHGHSHENHGHSHENHGHSHKH 347



 Score = 30.3 bits (65), Expect = 4.2
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -2

Query: 762 SHSLQGHDRRTSQRQHPNAGHD*EHHGVS 676
           SH   GH        H N GH  +HHG S
Sbjct: 323 SHENHGHSHENHGHSHENHGHSHKHHGHS 351



 Score = 29.5 bits (63), Expect = 7.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 762 SHSLQGHDRRTSQRQHPNAGHD*EHHGVSILH 667
           SH   GH  +     H N GH  E+HG S  H
Sbjct: 337 SHENHGHSHKHHGHSHDNHGHSHENHGHSHGH 368


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = -1

Query: 730  KSTTTSQRWSRLRTPRSLNTSRANNHHIRPMECEDLVLHGIAMST-NL---RGESVLHKA 563
            K+TT   RWS+ +TP      ++   H   +    L+ HG   ST NL   + + VL++ 
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453

Query: 562  ITGMLTY 542
              G +TY
Sbjct: 1454 ELGTMTY 1460


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,376,404
Number of Sequences: 59808
Number of extensions: 627255
Number of successful extensions: 1216
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4918128563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)