Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C07_e339_05.seq
         (1529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    34   0.045
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    34   0.045
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    31   0.56 
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    30   0.74 
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    30   0.97 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    28   3.0  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    28   3.9  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    27   9.1  

>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 34.3 bits (75), Expect = 0.045
 Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 8/152 (5%)
 Frame = +1

Query: 223 EHPSKPKWQPGETPAQVRPKDNLKPEGDFDRPQ--KTKWTSSERPDQVKPKDNLHPDGEF 396
           EH  +P  +P +     RPK   KPE     P+  KT     ++    K +D      +F
Sbjct: 134 EHGGRP--EPSKRKRTARPK---KPEAKEPSPKSRKTDEDKHDKDSNEKIEDVNEKTIKF 188

Query: 397 YDRPKTQWQPGDTPAQIRPKDNLRPEGDFEHPSKPKW------QPGETPAQVRPKDNLKP 558
            D+ + ++     P+  +P  ++  + + + PS+ +       Q  ETP+ V PK   KP
Sbjct: 189 ADKSQEEFNENGPPSG-QPNGHIESDNESKSPSQKESNESEDIQIAETPSNVTPKK--KP 245

Query: 559 EGEFERSQRSKWTTSERTEQIKTKEHLHQEIN 654
             E  +   ++  T ++ E   + E L   I+
Sbjct: 246 SPEVPKLPDNRELTVKQVENYDSWEDLVSSID 277



 Score = 27.5 bits (58), Expect = 5.2
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +1

Query: 130 KFYDKQKGQWQPGDTPAQVRPKDNLKPQGEFEHPSKPKW------QPGETPAQVRPKDNL 291
           KF DK + ++     P+  +P  +++   E + PS+ +       Q  ETP+ V PK   
Sbjct: 187 KFADKSQEEFNENGPPSG-QPNGHIESDNESKSPSQKESNESEDIQIAETPSNVTPKKKP 245

Query: 292 KPE 300
            PE
Sbjct: 246 SPE 248


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 34.3 bits (75), Expect = 0.045
 Identities = 36/120 (30%), Positives = 43/120 (35%), Gaps = 6/120 (5%)
 Frame = +1

Query: 433 TPAQIRPKDNLRPEGDFEH-PSKPKWQPGETPAQVRPKDNLKPEGEFERSQRSKWTTSER 609
           T     P     P  DF   PS PK +   + AQ RP     P G   +S     TT   
Sbjct: 296 TTHDTHPPKQQGPISDFRSIPSSPKTEGAPSNAQFRPSLPATPNGSVPQSNPLYDTTGLN 355

Query: 610 TEQI----KTKEHLHQEINFQDKPKGHW-QPGETPSQVRPKDNLKPEGDFDHPTKPKWQP 774
             Q      + + L  EINF      H  Q G  PS   P+     +   D P KP  QP
Sbjct: 356 GGQYPVVQNSAQPLLHEINFASNRNPHLKQGGAVPSSTLPQQ----QKSLDKP-KPAQQP 410


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -3

Query: 498 FGRMFKITFWS*IIFWPNLSWSISWLPLSFWSIVKFAVRM*IVFRFNLIRSFR 340
           F  +F  T++  II W N +WS+  LP+  W ++ F++   +  R  ++ S +
Sbjct: 301 FSLLF-FTYYGTIIPWNNFNWSVEGLPV--WRLIVFSILTLVCRRLPVVFSVK 350


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 640 HQEINFQDKPKGHWQPGETPSQVRP-KDNLKPEGDFDHPTKPKWQPGEIPTQVRPKDNLK 816
           HQ++     P  H   G+ PSQ  P +  LK  G+   P K   Q G +P Q     ++K
Sbjct: 423 HQKLPTSSPPSQHPPVGQIPSQYLPYQAGLKVPGNTPIPVK---QVGGMPLQSPLPVSMK 479

Query: 817 PEGD 828
           P  D
Sbjct: 480 PSAD 483


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 24/108 (22%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
 Frame = +1

Query: 436 PAQIRPKDNLRPEGDFEHPSKPKWQPGETPAQVRPKDNLKPEGEFERSQRSKWTTSERTE 615
           PA+ R +D+ R  GD+    +  ++PG    +        P GE+ R+ R ++    R E
Sbjct: 190 PARRRYRDDYRRGGDYR---RDAYRPGRDDER-----RYAPRGEYRRNNRDEYRRGGRDE 241

Query: 616 QIKTKEHLHQEINFQD--KPKG-HWQPGETPSQVRPKDNLKPEGDFDH 750
             +     ++  +  +  +P+G  ++PG    + R +D+ +P  D ++
Sbjct: 242 YRRNSRSDYRRPHDDEYRRPRGDEYRPGRDEYR-RSRDDGRPSHDDEY 288


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 51/237 (21%), Positives = 81/237 (34%), Gaps = 29/237 (12%)
 Frame = +1

Query: 142 KQKGQWQPGDTPAQVRPKDNLKPQGE--FEHPSKPKW-----QPGETPAQVRPKDNLKPE 300
           K KG+   G        K + KP+ +  F    +PK      +  E PA   P +++ P 
Sbjct: 151 KGKGKHHKGKHAKGKGKKSHPKPEDDSVFFDDERPKHHEFDDEDREFPAHHEPGEHMPPP 210

Query: 301 GDFDRPQK---TKWTSSERPDQVKPKDNLHPDGEFYDRPKTQWQPGD----TPAQIRPKD 459
               +P +         E  + + P    H  GE    P    +PG+     P    P +
Sbjct: 211 PMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGE 270

Query: 460 NLRPE------GDFEHPSKPKWQPGE----TPAQVRPKDNLKP---EGEFERSQRSKWTT 600
           ++ P       G+   P     +PGE     P    P +++ P     E           
Sbjct: 271 HMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMH 330

Query: 601 SERTEQIKTKEHLHQEINFQDKPKGHWQPGETPSQVRPKDNLKPEG--DFDHPTKPK 765
            E  E +      H E+   + P+ H  P +      PKD    +G  D +H   PK
Sbjct: 331 HEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKGPKDKEHHKGPKDKEHHKGPK 387


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
 Frame = +1

Query: 367 KDNLHPDGEFYDRPKTQWQPGDTPA-QIRPKDNLRPEGDFEHPSKPKWQPGETPAQVRPK 543
           + NL  +  F   P+ Q +PG      + P    + EG+F   +K K  P  TPA   P 
Sbjct: 340 RHNLSLNKAFIRIPRRQNEPGKGSFWMLDPSYIDQFEGNFFRRTK-KPTPSATPA-AHP- 396

Query: 544 DNLKPEGEFERSQRSKWTTSERTEQI-------KTKEHLHQEINFQDKPKGHWQPGETPS 702
           D  + E E    Q +K  ++ +TEQ+       ++K H  +  N +D+P+   Q G  P 
Sbjct: 397 DTAR-ENELAAIQ-TKGISAGKTEQLNPQKETSRSKTHTSRGENVEDRPQSLLQNGIQPI 454

Query: 703 QVRP-KDNLKPE 735
            +R  K  L PE
Sbjct: 455 IMRDGKLALNPE 466


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +3

Query: 834 QASKSQWT---SXDRPEQIKPKDXLHTDGDFYDXPKT 935
           +A KS+W       + EQ K  D   +DGDF D P++
Sbjct: 219 KAGKSEWEIEFEKFKLEQKKQPDVASSDGDFSDEPES 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,786,823
Number of Sequences: 5004
Number of extensions: 95301
Number of successful extensions: 215
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 858281342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)