Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C06_e331_06.seq
         (1528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    24   2.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   6.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   6.0  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 359 LPDCRTPGMRRYMVFPWTTASQRVTVFSVRKILNSIFTGCLSFRS 225
           LP CR        ++P  T    V    V+  +NSI TG L+F +
Sbjct: 50  LPACRLFCSEAAALWPKPTGEVHVGTTLVKVNINSINTGGLTFET 94


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 186 SAAPSRTGDKKDSRAEGQAAGED 254
           +A P+   DK+ SR E    GE+
Sbjct: 323 NATPANNNDKRKSRGEVDGLGEN 345


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 186 SAAPSRTGDKKDSRAEGQAAGED 254
           +A P+   DK+ SR E    GE+
Sbjct: 323 NATPANNNDKRKSRGEVDGLGEN 345


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 266,369
Number of Sequences: 336
Number of extensions: 5100
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45886400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)