Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C06_e331_06.seq
         (1528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi...    37   0.006
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    28   3.0  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   3.9  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    27   5.2  

>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
           Spa1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 14/47 (29%), Positives = 29/47 (61%)
 Frame = +1

Query: 361 KESFILLLDFAEERLACNNCIICVLKSRPDRATVLRTFMFMGFQPLP 501
           KE  + ++D A +RL C+  ++ V K+      ++++  ++GF+PLP
Sbjct: 166 KEGLVAIIDLAVDRLHCSKLVLFVDKNNSSLPYLVKSLHWVGFEPLP 212


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 578 NETNEINRVRN-EIIEFETKSSSSKRNYRVRTEIITEFAIPIILFHEKFVPVP 733
           NE ++ NR R  +  E +++S    R Y+V  E+   F   I+ F +   P P
Sbjct: 204 NEKSDSNRKRKRQAYELDSQSCPWHRQYKVEREVSRIFHQDILHFIDYITPTP 256


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 633 FVSNSIISFRTRFISFVSFPLLHIVM 556
           F  + +ISF   F SF+SFPLL  ++
Sbjct: 171 FHISHLISFHFLFFSFLSFPLLSFIL 196


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 642 VRNEIIEFEPKLSQSSPFQ*FYFMKNLFPYLFKY 743
           ++++  E  P+L ++  FQ    + NLFPYL +Y
Sbjct: 309 IKSDPSELSPELKENCSFQ----LYNLFPYLIRY 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,581,531
Number of Sequences: 5004
Number of extensions: 83103
Number of successful extensions: 202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 856299168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)