Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C06_e331_06.seq
         (1528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1007 + 33452774-33452993,33453028-33453122,33453208-334533...    29   7.4  

>02_05_1007 +
           33452774-33452993,33453028-33453122,33453208-33453329,
           33453392-33453694,33454657-33454918,33455039-33455140,
           33455931-33457151,33457250-33457342
          Length = 805

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = -3

Query: 539 GLLTCCGVRGEFGGSGWKPMNINVRSTVARSGLDLSTHIMQLLQARRSSAKSSNRMKLSL 360
           G ++C G RGEFG    K     + S+++++  D ST  +     + +S + + R   ++
Sbjct: 143 GFVSCRGNRGEFGLWHLKRFKAEISSSISKTAPDFSTVYVVSKGGKVTSVRQAVRQAPAV 202

Query: 359 LP 354
            P
Sbjct: 203 SP 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,408,664
Number of Sequences: 37544
Number of extensions: 573248
Number of successful extensions: 1313
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4907691684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)