Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C06_e331_06.seq
         (1528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              39   0.012
SB_54946| Best HMM Match : EGF (HMM E-Value=0.02)                      29   9.8  
SB_3617| Best HMM Match : Carb_anhydrase (HMM E-Value=3.4e-15)         29   9.8  

>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 38.7 bits (86), Expect = 0.012
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = +2

Query: 542 TTYSYITICSRGNETNEINRVRNEIIEFETKSSSSKRNYRVRTEIITEFAIP 697
           TTY YIT+C+R        R R+E I     S+ S++  R R E IT++  P
Sbjct: 550 TTYEYITVCTRSRHECITERTRHEYITCGHDSNPSRQRTRSRYEHITKWTRP 601



 Score = 37.9 bits (84), Expect = 0.021
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +2

Query: 542 TTYSYITICSRGNETNEINRVRNEIIEFETKSSSSKRNYRVRTEIITEFAIP 697
           TTY YIT+C+R        R R+E I     S+ S++  R R E IT +  P
Sbjct: 81  TTYEYITVCTRSRHECITERTRHEYITCGHDSNPSRQRIRSRYEHITVWTRP 132


>SB_54946| Best HMM Match : EGF (HMM E-Value=0.02)
          Length = 206

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +1

Query: 193 HHQEQVIRKILERKDKQPVKIEFKIFLTENTVTRWE 300
           H QE   R  LE+ D  P K   +IFLTENT   +E
Sbjct: 137 HQQESYARSHLEQCD--PAKDVSEIFLTENTFLLYE 170


>SB_3617| Best HMM Match : Carb_anhydrase (HMM E-Value=3.4e-15)
          Length = 338

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 790 WCIINENLQFYKVDRSYLKRYGNKFFMK*NYWNGELCDNF 671
           W I+ + +  Y+ + +YL+R  +      +  NG+LCDNF
Sbjct: 194 WIIVKQPVDIYRDEMAYLRRLESS-----SGKNGKLCDNF 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,259,254
Number of Sequences: 59808
Number of extensions: 623347
Number of successful extensions: 1551
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1542
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4965079671
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)