Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C06_e331_06.seq
         (1528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   5.3  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   7.0  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   7.0  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   9.2  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   9.2  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   9.2  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   9.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +1

Query: 421 IICVLKSRPDRATVLRTFMFMGFQPLPPNSPLTPQHVNNPDYIFLHY 561
           I+C + S     + +  F  +GF       P+    V+ P   FL Y
Sbjct: 317 IVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAVSGPGLAFLVY 363


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 778 NENLQFYKVDRSYLKRYGNKFFM 710
           NE+L +  +   YL+RY +  F+
Sbjct: 104 NEDLNWQPIATKYLRRYEDNIFL 126


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 778 NENLQFYKVDRSYLKRYGNKFFM 710
           NE+L +  +   YL+RY +  F+
Sbjct: 119 NEDLNWQPIATKYLRRYEDNIFL 141


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/46 (17%), Positives = 21/46 (45%)
 Frame = +2

Query: 596 NRVRNEIIEFETKSSSSKRNYRVRTEIITEFAIPIILFHEKFVPVP 733
           N + N   ++   +++  +        I +  IP+ +++  F+P P
Sbjct: 88  NTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNFLPRP 133


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/46 (17%), Positives = 21/46 (45%)
 Frame = +2

Query: 596 NRVRNEIIEFETKSSSSKRNYRVRTEIITEFAIPIILFHEKFVPVP 733
           N + N   ++   +++  +        I +  IP+ +++  F+P P
Sbjct: 88  NTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNFLPRP 133


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/46 (17%), Positives = 21/46 (45%)
 Frame = +2

Query: 596 NRVRNEIIEFETKSSSSKRNYRVRTEIITEFAIPIILFHEKFVPVP 733
           N + N   ++   +++  +        I +  IP+ +++  F+P P
Sbjct: 88  NTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNFLPRP 133


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/46 (17%), Positives = 21/46 (45%)
 Frame = +2

Query: 596 NRVRNEIIEFETKSSSSKRNYRVRTEIITEFAIPIILFHEKFVPVP 733
           N + N   ++   +++  +        I +  IP+ +++  F+P P
Sbjct: 88  NTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNFLPRP 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 327,900
Number of Sequences: 438
Number of extensions: 6123
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53472375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)