Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C05_e323_05.seq
         (1523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   5.2  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    27   6.8  
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo...    27   9.0  

>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 199 VVSASPSLFFLFW*IKDTFIQKSCNFIVHIFWIYLKSNIYKYTKN 333
           ++ +S S +  FW I   F+ +  + I+H F ++ +S    +TK+
Sbjct: 396 ILLSSNSHYSQFWAIFQAFVWRFLHSIIHAFILFYQSKSKAWTKH 440


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 224 FFCFGKSRILLFKSHVTLLFIFFGFTSKVIFINIQK 331
           F+CF  S I +   +   LF  F F   ++FI  Q+
Sbjct: 171 FYCFSPSGIYMSVGYTESLFAAFSFLGLLLFIKKQQ 206


>SPAC20G4.04c |hus1||checkpoint clamp complex protein
           Hus1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 310 NIYKYTKNTSDEMRVCCDILK*NNEPLLVLSM*WS 414
           N YK  ++ ++       + K NN+PLL LS  WS
Sbjct: 80  NFYKALRSAANASDSTVRLSKKNNQPLLSLSTTWS 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,360,677
Number of Sequences: 5004
Number of extensions: 77543
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 854316994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)