Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C05_e323_05.seq
         (1523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0252 - 6315834-6315959,6316074-6317018                           31   3.2  
05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297...    30   4.2  
05_04_0051 + 17511696-17512526                                         29   7.3  

>09_02_0252 - 6315834-6315959,6316074-6317018
          Length = 356

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 1139 PRXPXNLXETPTGKRXKTRAAWPEXXXXXPPPPRPXGXGXGR 1264
            PR   +   TP+ +  + RAA P      PPPP P      R
Sbjct: 49   PRLSTSSSRTPSPRAHRPRAATPFANENHPPPPPPPSTASRR 90


>05_06_0240 -
           26629218-26629323,26629412-26629490,26629656-26629761,
           26629844-26629947,26630069-26630168,26630256-26630351,
           26630464-26630541,26630603-26630671,26630766-26630846,
           26630879-26630935,26631016-26631105,26631192-26631278,
           26631690-26631794,26631899-26631994,26632222-26632397,
           26632847-26633006,26633151-26633600
          Length = 679

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 879 GRAIGAGLFAIRQLAKGGCAARRL 808
           G A G GL   RQL++GGC  +RL
Sbjct: 89  GDANGRGLLLARQLSRGGCGEQRL 112


>05_04_0051 + 17511696-17512526
          Length = 276

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 15/49 (30%), Positives = 18/49 (36%)
 Frame = +1

Query: 1054 GPPQGXNRXXRGPSDPPXSFGAGXXXNGPKXPXXPXGNPNXQKXXNXGG 1200
            GP    +     PSD   + G      GP  P  P G P   +  N GG
Sbjct: 153  GPSDPIDPIGPPPSDEIYNHGGHHTAPGPSNPIDPIGPPPSDEIYNRGG 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,382,636
Number of Sequences: 37544
Number of extensions: 605423
Number of successful extensions: 1600
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4896089576
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)