Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C04_e315_06.seq
         (1570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...   136   8e-33
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...   133   5e-32
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    28   4.0  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    27   9.3  

>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score =  136 bits (329), Expect = 8e-33
 Identities = 59/121 (48%), Positives = 85/121 (70%), Gaps = 2/121 (1%)
 Frame = +1

Query: 145 GRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGV 324
           GR+AG+K ++++  D+G+   P+GHA VAG++RYP KV K MG  +I +RS++KPF+K V
Sbjct: 16  GRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVV 75

Query: 325 NYNHLMPTRYSVDXSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 498
           NYNHLMPTRY+++    K   +A   K+P +R   R   +  FEE+Y+SGK+ WFF  LR
Sbjct: 76  NYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLR 135

Query: 499 F 501
           F
Sbjct: 136 F 136


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score =  133 bits (322), Expect = 5e-32
 Identities = 56/121 (46%), Positives = 85/121 (70%), Gaps = 2/121 (1%)
 Frame = +1

Query: 145 GRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGV 324
           GR+AG+K ++++N D+G+   P+GHA VAG++RYP KV K MG  +I KRS++KPF+K +
Sbjct: 16  GRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVI 75

Query: 325 NYNHLMPTRYSVDXSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 498
           NYNHLMPTRY+++    K   +     +P++R   +   +  FEE+Y++GK+ WFF  LR
Sbjct: 76  NYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLR 135

Query: 499 F 501
           F
Sbjct: 136 F 136


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -2

Query: 483 EPFVLSALVSLFETDPCVETQL---LALSWVF 397
           EPF ++ ++S  ++ PCV T L   + L+W F
Sbjct: 120 EPFQIARIISFEKSRPCVSTNLYDSVRLNWYF 151


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +1

Query: 301 IKPFVKGVNYNHLMPTRYSVDXSFEKFSAKDLKDPAKRKKLRFNTR 438
           + PF K   Y H + T  S   S  KF   +     K K  R +TR
Sbjct: 39  VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,151,771
Number of Sequences: 5004
Number of extensions: 76619
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 884049604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)