Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C04_e315_06.seq
         (1570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal prote...   165   8e-41
AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal pro...   165   8e-41
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    29   6.8  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    29   6.8  

>U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal protein
           L27 homolog protein.
          Length = 136

 Score =  165 bits (401), Expect = 8e-41
 Identities = 75/121 (61%), Positives = 94/121 (77%), Gaps = 2/121 (1%)
 Frame = +1

Query: 145 GRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGV 324
           G+YAGRKA+VVK  DEG SD+ Y HA +AGIDRYP KV K MGK KI KR+K+KPF+K V
Sbjct: 16  GKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVV 75

Query: 325 NYNHLMPTRYSVDXSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 498
           +Y HL+PTRYSVD +F+K   + + LK P+K++K     + +FEERYK+GKNKWFF KLR
Sbjct: 76  SYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLR 135

Query: 499 F 501
           F
Sbjct: 136 F 136


>AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 27 protein.
          Length = 136

 Score =  165 bits (401), Expect = 8e-41
 Identities = 75/121 (61%), Positives = 94/121 (77%), Gaps = 2/121 (1%)
 Frame = +1

Query: 145 GRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGV 324
           G+YAGRKA+VVK  DEG SD+ Y HA +AGIDRYP KV K MGK KI KR+K+KPF+K V
Sbjct: 16  GKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVV 75

Query: 325 NYNHLMPTRYSVDXSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 498
           +Y HL+PTRYSVD +F+K   + + LK P+K++K     + +FEERYK+GKNKWFF KLR
Sbjct: 76  SYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLR 135

Query: 499 F 501
           F
Sbjct: 136 F 136


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical protein
            ZK863.2 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 17/62 (27%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
 Frame = +2

Query: 1004 PXQFLGXGPKAXXGPXGXPVXXXGXXGXWRKXXKXXXGPXPGXXXXLPXPP-PAXXPSGX 1180
            P +  G GP    GP G P              +    P P      P PP P   P G 
Sbjct: 133  PGEAGGAGPPGPPGPDGNPGAPGNDGEAGSPGTRSISSPGPAGPAGPPGPPGPDGAPGGG 192

Query: 1181 XG 1186
             G
Sbjct: 193  SG 194


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical protein
            ZK863.2 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 17/62 (27%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
 Frame = +2

Query: 1004 PXQFLGXGPKAXXGPXGXPVXXXGXXGXWRKXXKXXXGPXPGXXXXLPXPP-PAXXPSGX 1180
            P +  G GP    GP G P              +    P P      P PP P   P G 
Sbjct: 133  PGEAGGAGPPGPPGPDGNPGAPGNDGEAGSPGTRSISSPGPAGPAGPPGPPGPDGAPGGG 192

Query: 1181 XG 1186
             G
Sbjct: 193  SG 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,831,591
Number of Sequences: 27780
Number of extensions: 476280
Number of successful extensions: 1117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4535578426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)