Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C03_e307_05.seq
         (1608 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   6.3  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   6.3  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   6.3  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   6.3  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 746 WKAYFMLPVVYIFFI 790
           W A + L ++++FFI
Sbjct: 233 WSALYFLTIIFLFFI 247


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -1

Query: 468 LLTNCT*SPARINLITKTLQRYKKCYYQTTYLSSK*IL*DISAAQINI*VEKIYINNHYI 289
           L  NC  +  R N   K L   +K ++   YL+    +   SA Q+N    KI+  N  +
Sbjct: 248 LSLNCL-NTGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASALQLNETQVKIWFQNRRM 306

Query: 288 PRYK 277
            + K
Sbjct: 307 KQKK 310


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -1

Query: 468 LLTNCT*SPARINLITKTLQRYKKCYYQTTYLSSK*IL*DISAAQINI*VEKIYINNHYI 289
           L  NC  +  R N   K L   +K ++   YL+    +   SA Q+N    KI+  N  +
Sbjct: 37  LSLNCL-NTGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASALQLNETQVKIWFQNRRM 95

Query: 288 PRYK 277
            + K
Sbjct: 96  KQKK 99


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -1

Query: 468 LLTNCT*SPARINLITKTLQRYKKCYYQTTYLSSK*IL*DISAAQINI*VEKIYINNHYI 289
           L  NC  +  R N   K L   +K ++   YL+    +   SA Q+N    KI+  N  +
Sbjct: 37  LSLNCL-NTGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASALQLNETQVKIWFQNRRM 95

Query: 288 PRYK 277
            + K
Sbjct: 96  KQKK 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,056
Number of Sequences: 336
Number of extensions: 5280
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 48651875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)