Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C03_e307_05.seq
         (1608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8600| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   4.5  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.9  

>SB_8600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 17/59 (28%), Positives = 20/59 (33%)
 Frame = +3

Query: 1224 GXXNXXXKPKGGXLDXXXTAPXGXXXGPXPPNLGGXQXXALXXXPXGNGAAXXXXPXXG 1400
            G      KP GG  +   T   G   G   PN GG +       P G G+     P  G
Sbjct: 80   GGNEGQTKPNGGGSEGQTTPNGGGSEGQTTPNGGGSEG---QTTPNGGGSEGQTTPNGG 135


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 25/88 (28%), Positives = 27/88 (30%)
 Frame = +3

Query: 1149 PFPVAPEGGXXXXFGXPXIXXPFXPGXXNXXXKPKGGXLDXXXTAPXGXXXGPXPPNLGG 1328
            P P A +GG     G      P  PG      +P  G        P G   G  PP  G 
Sbjct: 493  PPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGA 552

Query: 1329 XQXXALXXXPXGNGAAXXXXPXXGXGGP 1412
             Q         G G      P  G GGP
Sbjct: 553  GQGWGQPPPGAGQGGG-PPPPGAGQGGP 579


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,636,615
Number of Sequences: 59808
Number of extensions: 582924
Number of successful extensions: 830
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 86
effective length of database: 11,677,969
effective search space used: 5243408081
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)