Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_C03_e307_05.seq
(1608 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 32 0.99
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.7
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 31 1.7
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 31 1.7
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 31 3.0
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 30 4.0
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 30 5.3
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 30 5.3
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 30 5.3
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 30 5.3
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 5.3
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 29 9.2
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 29 9.2
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 29 9.2
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein 173
protein.
Length = 325
Score = 32.3 bits (70), Expect = 0.99
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = -1
Query: 1143 GPXXXPREREXQGXGGPXGFPXXRXTRPGXVXPXXRXNGXGP 1018
GP P E +G GGP G P + + PG P GP
Sbjct: 223 GPRGPPGETGDEGEGGPDGIPMEKKSPPGPRGPPGPAGPDGP 264
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical protein
F23H12.4 protein.
Length = 301
Score = 31.5 bits (68), Expect = 1.7
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = +1
Query: 1015 GGXGPIXPXGGXYXPXPXXXXGXETXGSPXSLGLPFPXGXXRPPXPSQXP 1164
G GP P G P P G P + G P G PP P P
Sbjct: 186 GPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPP 235
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 31.5 bits (68), Expect = 1.7
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = +1
Query: 1015 GGXGPIXPXGGXYXPXPXXXXGXETXGSPXSLGLPFPXGXXRPPXPSQXP 1164
G GP P G P P G P + G P G PP P P
Sbjct: 181 GPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPP 230
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 1 (col-1) gene, complete cds. ).
Length = 296
Score = 31.5 bits (68), Expect = 1.7
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = +1
Query: 1015 GGXGPIXPXGGXYXPXPXXXXGXETXGSPXSLGLPFPXGXXRPPXPSQXP 1164
G GP P G P P G P + G P G PP P P
Sbjct: 181 GPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPP 230
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen protein
142 protein.
Length = 325
Score = 30.7 bits (66), Expect = 3.0
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +1
Query: 1015 GGXGPIXPXGGXYXPXPXXXXGXETXGSPXSLGLPFPXGXXRPPXPSQXP 1164
G GP G P G G S GLP P G PP P+ P
Sbjct: 170 GPRGPAGDAGSPGQPGHPGSPGNPGRGGQRSRGLPGPSGRPGPPGPAGGP 219
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 30.3 bits (65), Expect = 4.0
Identities = 14/54 (25%), Positives = 14/54 (25%)
Frame = +2
Query: 1235 PXXKTQGGXPXXPXNGPXXEXXGAPAPXFGGXXXPGPXXXXXXKRGXXXPPPXP 1396
P GG P P PAP P G PPP P
Sbjct: 321 PAGGYDGGAGAAPEAAPAAAAAPQPAPAPAAAAAPAGGYQGGAAAGAAAPPPAP 374
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical protein
T28C6.6 protein.
Length = 299
Score = 29.9 bits (64), Expect = 5.3
Identities = 15/50 (30%), Positives = 17/50 (34%)
Frame = +1
Query: 1015 GGXGPIXPXGGXYXPXPXXXXGXETXGSPXSLGLPFPXGXXRPPXPSQXP 1164
G GP P G P G + P + G P P G P P P
Sbjct: 184 GNKGPSGPNGNPGAPGAPGQPGQDAPSEPITPGAPGPAGPAGPQGPPGAP 233
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical protein
T28C6.4 protein.
Length = 299
Score = 29.9 bits (64), Expect = 5.3
Identities = 15/50 (30%), Positives = 17/50 (34%)
Frame = +1
Query: 1015 GGXGPIXPXGGXYXPXPXXXXGXETXGSPXSLGLPFPXGXXRPPXPSQXP 1164
G GP P G P G + P + G P P G P P P
Sbjct: 184 GNKGPSGPNGNPGAPGAPGQPGQDAPSEPITPGAPGPAGPAGPQGPPGAP 233
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 29.9 bits (64), Expect = 5.3
Identities = 15/50 (30%), Positives = 17/50 (34%)
Frame = +1
Query: 1015 GGXGPIXPXGGXYXPXPXXXXGXETXGSPXSLGLPFPXGXXRPPXPSQXP 1164
G GP P G P G + P + G P P G P P P
Sbjct: 184 GNKGPSGPNGNPGAPGAPGQPGQDAPSEPITPGAPGPAGPAGPQGPPGAP 233
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 29.9 bits (64), Expect = 5.3
Identities = 15/50 (30%), Positives = 17/50 (34%)
Frame = +1
Query: 1015 GGXGPIXPXGGXYXPXPXXXXGXETXGSPXSLGLPFPXGXXRPPXPSQXP 1164
G GP P G P G + P + G P P G P P P
Sbjct: 184 GNKGPSGPNGNPGAPGAPGQPGQDAPSEPITPGAPGPAGPAGPQGPPGAP 233
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.9 bits (64), Expect = 5.3
Identities = 19/60 (31%), Positives = 21/60 (35%)
Frame = +2
Query: 1235 PXXKTQGGXPXXPXNGPXXEXXGAPAPXFGGXXXPGPXXXXXXKRGXXXPPPXPGXXGXF 1414
P QGG P P + AP+P G GP G PPP G G F
Sbjct: 335 PQGPPQGGPPQGSFGAPPPQQFHAPSPQSFG----GPPPPVSSAPGNFAPPPQSGPPGAF 390
Score = 29.9 bits (64), Expect = 5.3
Identities = 30/93 (32%), Positives = 31/93 (33%), Gaps = 5/93 (5%)
Frame = -3
Query: 1405 PXPXXGXXXXAAPFPXGXXXRAXXXXPPKXGGXGPXXFPXGAVXXXSRXPPLGFXXXFX- 1229
P P G AP P P GG GP P G S PP G F
Sbjct: 380 PPPQSGPPGAFAPPPSAFGAPQGPGGP---GGYGPPP-PGGPGAPGSYGPPQGGPGGFGP 435
Query: 1228 ----XPGKXGXXIXGFPXLXXXPPSGATGKGXG 1142
PG G GFP + PP GA G G
Sbjct: 436 PPPGGPGAYGPPPTGFPPV-GAPPPGAAGAPGG 467
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical protein
F55C10.3 protein.
Length = 266
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/50 (30%), Positives = 17/50 (34%)
Frame = +1
Query: 1015 GGXGPIXPXGGXYXPXPXXXXGXETXGSPXSLGLPFPXGXXRPPXPSQXP 1164
G GP P G P G + P + G P P G P P P
Sbjct: 151 GNKGPSGPNGNPGAPGAPGQPGQDAPSEPITPGAPGPQGTPGPQGPPGQP 200
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical protein
F55C10.2 protein.
Length = 299
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/50 (30%), Positives = 17/50 (34%)
Frame = +1
Query: 1015 GGXGPIXPXGGXYXPXPXXXXGXETXGSPXSLGLPFPXGXXRPPXPSQXP 1164
G GP P G P G + P + G P P G P P P
Sbjct: 184 GNKGPSGPNGNPGAPGAPGQPGQDAPSEPITPGAPGPQGTPGPQGPPGQP 233
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical protein
F54B11.2 protein.
Length = 304
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +1
Query: 1015 GGXGPIXPXGGXYXPXPXXXXGXETXGSPXSLGLPFPXGXXRPPXP 1152
G GP G P P G T P + G P G PP P
Sbjct: 193 GPAGPAGNDGAAGTPGPDGPAGESTYPEPAAPGPAGPPGPAGPPGP 238
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,841,749
Number of Sequences: 27780
Number of extensions: 514553
Number of successful extensions: 1176
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4670504100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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