Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C02_e299_06.seq
         (1506 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   4.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   7.8  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 170 TLSRFPATLSTVNYAQSAAGVPKITFKNYEPPKEE 274
           +L RF  T   VNY Q  +   KI+     PP EE
Sbjct: 9   SLERF-CTYGNVNYRQRRSQPLKISCLKTTPPPEE 42


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -2

Query: 149 PICHNTTKPWFTLCQILSIVVGFTLVPI 66
           P CH     +++    L+I+  F ++P+
Sbjct: 223 PACHTLANTFWSALYFLTIIFLFFIIPL 250


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,412
Number of Sequences: 336
Number of extensions: 4745
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45169425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)