Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C02_e299_06.seq
         (1506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    91   5e-19
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   1.3  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    29   2.2  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    29   2.2  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    28   3.9  

>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 90.6 bits (215), Expect = 5e-19
 Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
 Frame = +2

Query: 269 EEHHDIKNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLP-NDI 445
           E +  + + R++RP SPHLTIY  QLT  LS  HR TG ++   + A  +G LV P    
Sbjct: 46  EANSRLASQRVHRPNSPHLTIYEPQLTWYLSSLHRITGCVVAGTLYAFAMGYLVAPLAGY 105

Query: 446 SYYMAIVEGLNLSPVTLLL--AKALIAAPFGYHFANGIRHLYWDTAKGLTIKEVYSTGY 616
           S   A + GL     T +   AK +I+ P  +H  NGIRHL WDT K L++K VY TGY
Sbjct: 106 SLDTATISGLIQQVPTWIKVPAKFVISYPLTFHIFNGIRHLIWDTTKELSLKGVYRTGY 164


>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 272 EHHDIKNARMNRPLSPHLTIYSI 340
           E   IKNA+M  P+S HL  YSI
Sbjct: 133 ESQRIKNAKMKSPISTHLAKYSI 155


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +1

Query: 373  NDRVNPNDLCQCTWHWSFGIAQ*YFLLHGYC*RTKLVPGDTFACKSIDCCTIRIP 537
            N  + PN      WHW   +    +L+ G    + LV G    CKS +  TI  P
Sbjct: 1382 NGVLQPNSNLVGFWHWMHSLTPFTYLIEGLL--SDLVHGLPVECKSHEMLTINPP 1434


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +2

Query: 161 VLATLSRFPATLSTVNYAQSAAGVPKITFKNYEP---PKEEHHDIKNARMNRPLSPHLTI 331
           +L +LSR  +T S   Y     G+   + K+Y+P   P E   ++K   M  P +P    
Sbjct: 4   ILKSLSRSYSTTSPRLYVDVVQGLYISSLKSYKPKAVPSETAAEVKEWSM--PSAPTAPK 61

Query: 332 YSIQLTSMLS 361
           Y +  TS L+
Sbjct: 62  YDVDFTSALN 71


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 161 PTYCPICHN--TTKPWFTLCQILSIVVGFTLVPIXCRPG 51
           PT   +CH   TTKPW  L   L++   F+L P+  + G
Sbjct: 373 PTSILLCHGNITTKPWIALANNLAV---FSLWPLLKKDG 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,100,944
Number of Sequences: 5004
Number of extensions: 74196
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 842423950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)