Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C02_e299_06.seq
         (1506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0165 + 1152520-1152582,1152995-1153060,1153688-1154065           37   0.048
07_03_0628 + 20074305-20074368,20074743-20075068                       35   0.15 
01_03_0071 + 12203227-12203368,12203551-12203703,12204622-122046...    31   2.4  
07_03_0032 - 12651989-12652636,12652726-12652956,12653515-126536...    29   7.2  

>02_01_0165 + 1152520-1152582,1152995-1153060,1153688-1154065
          Length = 168

 Score = 36.7 bits (81), Expect = 0.048
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 263 PKEEHHDIKNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLIL 391
           P    H +     NRPLSPHL +   QL++  S++HR  G  L
Sbjct: 107 PLHTSHPLSAPVANRPLSPHLPLKKPQLSATFSISHRIFGAAL 149


>07_03_0628 + 20074305-20074368,20074743-20075068
          Length = 129

 Score = 35.1 bits (77), Expect = 0.15
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 302 NRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSAL 412
           NRPLSPHL +   QL++  S++HR  G  L   + ++
Sbjct: 81  NRPLSPHLPLKKPQLSATFSISHRIFGAALGAVIISI 117


>01_03_0071 +
           12203227-12203368,12203551-12203703,12204622-12204683,
           12204749-12204830,12206029-12206126,12206240-12206657,
           12206793-12206915,12207159-12207178
          Length = 365

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 194 LSTVNYAQSAAGVPKITFKNYEPPKEEHHDIKNARM 301
           LS   Y + +   PK+   NY  PK  HH  KN  M
Sbjct: 235 LSQTRYNEHSNKQPKLLTANYHGPKNMHHHHKNTNM 270


>07_03_0032 -
           12651989-12652636,12652726-12652956,12653515-12653634,
           12653768-12653891,12654023-12654366
          Length = 488

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 298 NESPIVSTSHHLFNSIDEHVISYS*NDRVNPNDLCQC 408
           NE PI ++  H         ISY  +D V+PND+ +C
Sbjct: 363 NEQPIGASRRHTSIDFRLPYISYGSDDDVSPNDIEEC 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,226,846
Number of Sequences: 37544
Number of extensions: 543233
Number of successful extensions: 1071
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4826476928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)