Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_C02_e299_06.seq
(1506 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U57877-1|AAB41838.1| 169|Homo sapiens integral membrane protein... 108 6e-23
D49737-1|BAA31998.1| 169|Homo sapiens cytochrome b large subuni... 108 6e-23
CR457102-1|CAG33383.1| 169|Homo sapiens SDHC protein. 108 6e-23
BC066329-1|AAH66329.1| 169|Homo sapiens succinate dehydrogenase... 108 6e-23
BC033626-1|AAH33626.1| 169|Homo sapiens succinate dehydrogenase... 108 6e-23
BC020808-1|AAH20808.1| 169|Homo sapiens succinate dehydrogenase... 108 6e-23
AL592295-2|CAH70271.1| 169|Homo sapiens succinate dehydrogenase... 108 6e-23
AF039594-1|AAC27993.1| 169|Homo sapiens succinate dehydrogenase... 108 6e-23
AF081495-1|AAC31940.1| 135|Homo sapiens integral membrane prote... 87 2e-16
AB211234-1|BAE46978.1| 135|Homo sapiens succinate dehydrogenase... 87 2e-16
AB201252-1|BAE46977.1| 116|Homo sapiens succinate dehydrogenase... 82 4e-15
AB211235-1|BAE46979.1| 150|Homo sapiens succinate dehydrogenase... 46 4e-04
Y12642-1|CAA73189.1| 128|Homo sapiens E48 antigen protein. 33 2.7
X82693-1|CAA58014.1| 128|Homo sapiens E48 antigen protein. 33 2.7
BC031330-1|AAH31330.1| 128|Homo sapiens lymphocyte antigen 6 co... 33 2.7
BC022806-1|AAH22806.1| 129|Homo sapiens LY6D protein protein. 33 2.7
>U57877-1|AAB41838.1| 169|Homo sapiens integral membrane protein
CII-3 protein.
Length = 169
Score = 108 bits (259), Expect = 6e-23
Identities = 51/109 (46%), Positives = 67/109 (61%)
Frame = +2
Query: 287 KNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIV 466
KN NRPLSPH+TIYS L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 467 EGLNLSPVTLLLAKALIAAPFGYHFANGIRHLYWDTAKGLTIKEVYSTG 613
+ L L P + AK + P YH NGIRHL WD KGL I ++Y +G
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>D49737-1|BAA31998.1| 169|Homo sapiens cytochrome b large subunit
of complex II protein.
Length = 169
Score = 108 bits (259), Expect = 6e-23
Identities = 51/109 (46%), Positives = 67/109 (61%)
Frame = +2
Query: 287 KNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIV 466
KN NRPLSPH+TIYS L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 467 EGLNLSPVTLLLAKALIAAPFGYHFANGIRHLYWDTAKGLTIKEVYSTG 613
+ L L P + AK + P YH NGIRHL WD KGL I ++Y +G
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>CR457102-1|CAG33383.1| 169|Homo sapiens SDHC protein.
Length = 169
Score = 108 bits (259), Expect = 6e-23
Identities = 51/109 (46%), Positives = 67/109 (61%)
Frame = +2
Query: 287 KNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIV 466
KN NRPLSPH+TIYS L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 467 EGLNLSPVTLLLAKALIAAPFGYHFANGIRHLYWDTAKGLTIKEVYSTG 613
+ L L P + AK + P YH NGIRHL WD KGL I ++Y +G
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>BC066329-1|AAH66329.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 108 bits (259), Expect = 6e-23
Identities = 51/109 (46%), Positives = 67/109 (61%)
Frame = +2
Query: 287 KNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIV 466
KN NRPLSPH+TIYS L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 467 EGLNLSPVTLLLAKALIAAPFGYHFANGIRHLYWDTAKGLTIKEVYSTG 613
+ L L P + AK + P YH NGIRHL WD KGL I ++Y +G
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>BC033626-1|AAH33626.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 108 bits (259), Expect = 6e-23
Identities = 51/109 (46%), Positives = 67/109 (61%)
Frame = +2
Query: 287 KNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIV 466
KN NRPLSPH+TIYS L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 467 EGLNLSPVTLLLAKALIAAPFGYHFANGIRHLYWDTAKGLTIKEVYSTG 613
+ L L P + AK + P YH NGIRHL WD KGL I ++Y +G
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>BC020808-1|AAH20808.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 108 bits (259), Expect = 6e-23
Identities = 51/109 (46%), Positives = 67/109 (61%)
Frame = +2
Query: 287 KNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIV 466
KN NRPLSPH+TIYS L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 467 EGLNLSPVTLLLAKALIAAPFGYHFANGIRHLYWDTAKGLTIKEVYSTG 613
+ L L P + AK + P YH NGIRHL WD KGL I ++Y +G
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>AL592295-2|CAH70271.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 108 bits (259), Expect = 6e-23
Identities = 51/109 (46%), Positives = 67/109 (61%)
Frame = +2
Query: 287 KNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIV 466
KN NRPLSPH+TIYS L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 467 EGLNLSPVTLLLAKALIAAPFGYHFANGIRHLYWDTAKGLTIKEVYSTG 613
+ L L P + AK + P YH NGIRHL WD KGL I ++Y +G
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>AF039594-1|AAC27993.1| 169|Homo sapiens succinate dehydrogenase
subunit C protein.
Length = 169
Score = 108 bits (259), Expect = 6e-23
Identities = 51/109 (46%), Positives = 67/109 (61%)
Frame = +2
Query: 287 KNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIV 466
KN NRPLSPH+TIYS L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 467 EGLNLSPVTLLLAKALIAAPFGYHFANGIRHLYWDTAKGLTIKEVYSTG 613
+ L L P + AK + P YH NGIRHL WD KGL I ++Y +G
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>AF081495-1|AAC31940.1| 135|Homo sapiens integral membrane protein
CII-3b protein.
Length = 135
Score = 87.0 bits (206), Expect = 2e-16
Identities = 42/100 (42%), Positives = 58/100 (58%)
Frame = +2
Query: 314 SPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIVEGLNLSPVT 493
SP L I + L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V+ L L P
Sbjct: 19 SPQLCIRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPAL 78
Query: 494 LLLAKALIAAPFGYHFANGIRHLYWDTAKGLTIKEVYSTG 613
+ AK + P YH NGIRHL WD KGL I ++Y +G
Sbjct: 79 IHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 118
>AB211234-1|BAE46978.1| 135|Homo sapiens succinate dehydrogenase
complex, subunit C delta3 alternative splicing variant
protein.
Length = 135
Score = 87.0 bits (206), Expect = 2e-16
Identities = 42/100 (42%), Positives = 58/100 (58%)
Frame = +2
Query: 314 SPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIVEGLNLSPVT 493
SP L I + L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V+ L L P
Sbjct: 19 SPQLCIRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPAL 78
Query: 494 LLLAKALIAAPFGYHFANGIRHLYWDTAKGLTIKEVYSTG 613
+ AK + P YH NGIRHL WD KGL I ++Y +G
Sbjct: 79 IHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 118
>AB201252-1|BAE46977.1| 116|Homo sapiens succinate dehydrogenase
complex, subunit C delta2+3 alternative splicing varian
protein.
Length = 116
Score = 82.2 bits (194), Expect = 4e-15
Identities = 39/95 (41%), Positives = 55/95 (57%)
Frame = +2
Query: 329 IYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAIVEGLNLSPVTLLLAK 508
+ S L +S+ HR TG+ L+ VS G+ AL+LP + Y+ +V+ L L P + AK
Sbjct: 5 LLSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAK 64
Query: 509 ALIAAPFGYHFANGIRHLYWDTAKGLTIKEVYSTG 613
+ P YH NGIRHL WD KGL I ++Y +G
Sbjct: 65 FALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 99
>AB211235-1|BAE46979.1| 150|Homo sapiens succinate dehydrogenase
complex, subunit C delta5 alternative splicing variant
protein.
Length = 150
Score = 46.0 bits (104), Expect = 4e-04
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +2
Query: 287 KNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYV 403
KN NRPLSPH+TIYS L +S+ HR TG+ L+ V
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSADV 82
>Y12642-1|CAA73189.1| 128|Homo sapiens E48 antigen protein.
Length = 128
Score = 33.1 bits (72), Expect = 2.7
Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 515 SMLLQAKVSPGTSLV--LQQ*PCNKKYHWAIPKLQCQVH*HKSLGLTLS 375
S LQ +VS GTS Q+ CN+K H A P H SLGL LS
Sbjct: 70 SYTLQGQVSSGTSSTQCCQEDLCNEKLHNAAPTRTALAHSALSLGLALS 118
>X82693-1|CAA58014.1| 128|Homo sapiens E48 antigen protein.
Length = 128
Score = 33.1 bits (72), Expect = 2.7
Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 515 SMLLQAKVSPGTSLV--LQQ*PCNKKYHWAIPKLQCQVH*HKSLGLTLS 375
S LQ +VS GTS Q+ CN+K H A P H SLGL LS
Sbjct: 70 SYTLQGQVSSGTSSTQCCQEDLCNEKLHNAAPTRTALAHSALSLGLALS 118
>BC031330-1|AAH31330.1| 128|Homo sapiens lymphocyte antigen 6
complex, locus D protein.
Length = 128
Score = 33.1 bits (72), Expect = 2.7
Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 515 SMLLQAKVSPGTSLV--LQQ*PCNKKYHWAIPKLQCQVH*HKSLGLTLS 375
S LQ +VS GTS Q+ CN+K H A P H SLGL LS
Sbjct: 70 SYTLQGQVSSGTSSTQCCQEDLCNEKLHNAAPTRTALAHSALSLGLALS 118
>BC022806-1|AAH22806.1| 129|Homo sapiens LY6D protein protein.
Length = 129
Score = 33.1 bits (72), Expect = 2.7
Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 515 SMLLQAKVSPGTSLV--LQQ*PCNKKYHWAIPKLQCQVH*HKSLGLTLS 375
S LQ +VS GTS Q+ CN+K H A P H SLGL LS
Sbjct: 71 SYTLQGQVSSGTSSTQCCQEDLCNEKLHNAAPTRTALAHSALSLGLALS 119
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,835,288
Number of Sequences: 237096
Number of extensions: 3176349
Number of successful extensions: 8276
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8276
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22362126672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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