Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C02_e299_06.seq
         (1506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29443-5|CAA82572.1|  182|Caenorhabditis elegans Hypothetical pr...    87   4e-17
L26545-1|AAA20081.1|  182|Caenorhabditis elegans CYT-1 protein.        87   4e-17

>Z29443-5|CAA82572.1|  182|Caenorhabditis elegans Hypothetical
           protein T07C4.7 protein.
          Length = 182

 Score = 86.6 bits (205), Expect = 4e-17
 Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
 Frame = +2

Query: 284 IKNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAI 463
           +K    NRP++PHLT+Y  QLT MLS  HR +G ++   +   GIG  VLP D + ++  
Sbjct: 45  LKQRSKNRPIAPHLTVYQPQLTWMLSGFHRISGCVMAGTLLVGGIGFAVLPFDFTAFVDF 104

Query: 464 VEGLNLSPVTLLLAKALIAAPFGYHFANGIRHLYWDTAKGL-TIKEVYSTGY 616
           +   NL      + K +IA P  +H  NGIR L +D AKG+  + ++Y +GY
Sbjct: 105 IRSWNLPCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVNNVGQIYKSGY 156


>L26545-1|AAA20081.1|  182|Caenorhabditis elegans CYT-1 protein.
          Length = 182

 Score = 86.6 bits (205), Expect = 4e-17
 Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
 Frame = +2

Query: 284 IKNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDISYYMAI 463
           +K    NRP++PHLT+Y  QLT MLS  HR +G ++   +   GIG  VLP D + ++  
Sbjct: 45  LKQRSKNRPIAPHLTVYQPQLTWMLSGFHRISGCVMAGTLLVGGIGFAVLPFDFTAFVDF 104

Query: 464 VEGLNLSPVTLLLAKALIAAPFGYHFANGIRHLYWDTAKGL-TIKEVYSTGY 616
           +   NL      + K +IA P  +H  NGIR L +D AKG+  + ++Y +GY
Sbjct: 105 IRSWNLPCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVNNVGQIYKSGY 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,469,130
Number of Sequences: 27780
Number of extensions: 448282
Number of successful extensions: 978
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4339584726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)