Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C02_e299_06.seq
         (1506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   3.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   6.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   9.1  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 567 QYKCLMPFAKWYPNGAAINAFASKSVTG 484
           +  C+M F  W  NGA ++    K   G
Sbjct: 169 EQSCIMKFGSWTYNGAQVDLKHMKQEAG 196


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = -1

Query: 588 VRPLAVSQYKCLMPFAKWYPNGAAINAFASKSVTGDK 478
           VR     Q  C M F  W  +G  I+        GDK
Sbjct: 149 VRYFPFDQQTCFMKFGSWTYDGIQIDLKHINQNMGDK 185


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 123 MVYTLSNIKYRRRLHPRANXLQTRGXPL 40
           +VY   NI+ R +   R   ++TR  PL
Sbjct: 314 IVYGAFNIRDRNKTSARPTTIETRVTPL 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 292,187
Number of Sequences: 438
Number of extensions: 6426
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52635000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)