Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C02_e299_06.seq
         (1506 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09600.1 68418.m01111 succinate dehydrogenase cytochrome b su...    42   0.001
At5g54790.1 68418.m06825 hypothetical protein                          30   3.4  

>At5g09600.1 68418.m01111 succinate dehydrogenase cytochrome b
           subunit family protein similar to succinate
           dehydrogenase subunit 3 [Gossypium hirsutum]
           GI:14861484; contains Pfam profile PF01127: Succinate
           dehydrogenase cytochrome b subunit
          Length = 213

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
 Frame = +2

Query: 305 RPLSPHLTIYSIQLTSMLSLTHRTTGLILT-----TYVSALGIGALVLPNDISYYMAIVE 469
           RPLSPHL++Y  Q+ SMLS+ +R +G+ LT      Y+  L +G + L     Y +    
Sbjct: 125 RPLSPHLSVYQPQMNSMLSIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFYQVLYHT 184

Query: 470 GLNLSPVTLLLAKALI 517
              L  +T + A A I
Sbjct: 185 QQQLPVITSVTALAAI 200


>At5g54790.1 68418.m06825 hypothetical protein 
          Length = 119

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 152 NKSVLATLSRFPATLSTVNYA-QSAAGVPKITFKNYEPPKEEHHDIKNARMNRPLSPHLT 328
           + S ++  + F AT  T+N + Q  + +     +N E P   HHD+++   +   SP+++
Sbjct: 51  SSSSVSDAASFVATKKTLNVSKQEGSNLDIKRTRNREIPFGRHHDLEDTASSPSGSPNVS 110

Query: 329 IY 334
           IY
Sbjct: 111 IY 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,188,307
Number of Sequences: 28952
Number of extensions: 408048
Number of successful extensions: 740
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4019292864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)