Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C01_e291_05.seq
         (1563 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    26   0.66 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    26   0.66 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   8.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   8.1  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 26.2 bits (55), Expect = 0.66
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 419 RDYNYNNENDASYCPSNMPNNDDWSN 496
           R YNY N     Y   N PN++++ N
Sbjct: 348 RQYNYPNPQQQYYYNKNHPNSENYIN 373


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 0.66
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 419 RDYNYNNENDASYCPSNMPNNDDWSN 496
           R YNY N     Y   N PN++++ N
Sbjct: 296 RQYNYPNPQQQYYYNKNHPNSENYIN 321


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 675 SVNIFHVQFFNCFMSIFFARIA 610
           S + F  QFF+C+  I F R A
Sbjct: 414 SCSSFFQQFFHCYCPIKFGRKA 435


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 14/63 (22%), Positives = 23/63 (36%)
 Frame = +2

Query: 71  FGTRVARGASDHGMRGDRRGTKRQLDFTGAGLAFDCRAEPAGEYEPTQPAKIMISRKTLA 250
           +G   + G    GM   R     ++D   AG     +     EY P  P+ + ++     
Sbjct: 65  YGGPPSGGQPPQGMPYPRFPPYDRMDIRAAGYYGPQQQMDGQEYRPDSPSSMHMANTAAP 124

Query: 251 TGH 259
            GH
Sbjct: 125 NGH 127


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,621
Number of Sequences: 336
Number of extensions: 4728
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 47115500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)