Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C01_e291_05.seq
         (1563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    33   0.14 
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    33   0.14 
SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1 famil...    30   1.00 
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    29   1.3  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   7.0  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    27   9.3  

>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 422 DYNYNNENDASYCPSNMPNNDDWSNEDASAAIDLHEQVKLA 544
           D + +N+ND     +N  NN +  ++D  A ++LHE +KLA
Sbjct: 528 DNDNDNDNDRDSNNNNNNNNTNTDDDDKLAYLELHEALKLA 568


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 422 DYNYNNENDASYCPSNMPNNDDWSNEDASAAIDLHEQVKLA 544
           D + +N+ND     +N  NN +  ++D  A ++LHE +KLA
Sbjct: 528 DNDNDNDNDRDSNNNNNNNNTNTDDDDKLAYLELHEALKLA 568


>SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 671 TEKTPAGEKETVAATSFFSVYSRLPNKLSSNMRDSLSVP 787
           T K P  E+   +  +  SVYSRL ++L S + D L +P
Sbjct: 86  TTKAPVMERTESSHQATLSVYSRLISELESQLDDRLPLP 124


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 608 YAMRAKKIDMKQLKNCTWKML 670
           YA RAKK+D++ LK   WK L
Sbjct: 624 YAKRAKKVDVRVLKEKLWKCL 644


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 722 RTKSPPQFPFPRPVFSPSTFS 660
           R K+P +  FP+P  SP TFS
Sbjct: 486 REKTPVEKSFPKPASSPVTFS 506


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = +2

Query: 275 NFKTPIDRGLDESHFRKLFLRRKVVMLRKRDLERSKGAEPATVTVEELRDYNYNNENDAS 454
           N + P+     E  F  LF ++    +  ++LER K   P + +  +  +Y+     +  
Sbjct: 42  NAQIPLKASKPEDPFANLFQKKTDNKISLKELERQKVGTPDSNSTPKSSNYDPFENLEIL 101

Query: 455 YCPSNMPNNDD 487
           +  SN P + D
Sbjct: 102 HQLSNTPRDKD 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,229,411
Number of Sequences: 5004
Number of extensions: 76281
Number of successful extensions: 277
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 880085256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)