Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C01_e291_05.seq
         (1563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0091 + 18048595-18050559                                         31   1.9  
07_01_0772 - 5923033-5923645,5923721-5923923,5924006-5924893,592...    31   3.3  
09_04_0158 - 15197667-15198548,15201158-15201598                       30   4.3  
07_03_0097 + 13372270-13372399,13372958-13373457                       30   4.3  
05_03_0449 - 14161812-14162902,14163121-14163153,14164248-141644...    30   4.3  
03_05_0266 + 22537578-22538081                                         29   7.6  
08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128     29   10.0 
05_05_0123 - 22553400-22554509                                         29   10.0 

>01_05_0091 + 18048595-18050559
          Length = 654

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +1

Query: 607 VRDASEENRHETVEELHVENVD-GENTGRGKGNCGGDFVLQRVLSTTQQIVVQHARQLER 783
           ++ +S +   +   E  +  +D GE++ + K N   DFV     S+   I   H ++   
Sbjct: 548 LKPSSSQKASDKAYEGIINKMDSGESSSQWKNNVDADFVGHPTSSSRPSIQQSHDKESTN 607

Query: 784 PAGSALECHRQHRLRRMGGHAASSSSYR 867
           P  S  +  R+HR R   GH      +R
Sbjct: 608 PLESDGKEARKHR-RSRSGHRQGKHKHR 634


>07_01_0772 -
           5923033-5923645,5923721-5923923,5924006-5924893,
           5925010-5925058,5925185-5925275,5925405-5925661,
           5925770-5925960
          Length = 763

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 300 PLSIGVLKFASFHVCPVAKVFLLIMILAGCVGSYSPAGSARQSNASPA 157
           P+++G L++  FHVCPV  +        G   +++P G     NA  A
Sbjct: 648 PVTLGALEYEVFHVCPVRAI---AAAPGGAAVAFAPVGLLDMFNAGGA 692


>09_04_0158 - 15197667-15198548,15201158-15201598
          Length = 440

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 722 RTKSPPQFPFPRPVFSPS 669
           R +SPP  PF  PV+SPS
Sbjct: 204 RARSPPHVPFEHPVYSPS 221


>07_03_0097 + 13372270-13372399,13372958-13373457
          Length = 209

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 883 TCPARICSCSSSLRGPPFSAGGAADGIREQSQRDAQAVAH 764
           +C +  CSCS S   PP  A  A +G R+Q+   A A  H
Sbjct: 117 SCSSHGCSCSPSNSSPP--AAEACNGSRQQAHGTAAAPPH 154


>05_03_0449 -
           14161812-14162902,14163121-14163153,14164248-14164457,
           14166348-14167011,14167129-14167287,14167449-14167563,
           14167672-14167867,14167965-14168286,14168695-14168865,
           14169486-14169495,14169932-14170285,14172429-14172553
          Length = 1149

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 224 IMISRKTLATGHTWNEANFKTPIDRGLDESHFRKLFLR 337
           +M  RK + TGH  ++ N    IDRG+ E  F  L  R
Sbjct: 198 MMNIRKVVTTGHQLHKGNLLGSIDRGIPEGPFPHLHSR 235


>03_05_0266 + 22537578-22538081
          Length = 167

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 234 LIMILAGCVGSYSPAGSARQSNASPAPVKS 145
           L+++LA   GS+ PA ++  +  SPAP  S
Sbjct: 5   LVILLAVAAGSWQPAATSTPATVSPAPAVS 34


>08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128
          Length = 1226

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 317  FRKLFLRRKVVMLRKRDLERSKG-AEPATVTVEELRDYNYNNENDASYCPSNMPNN 481
            ++  FL +K+ MLR  DLE ++G  +P  V + +L    Y +    S+   N+PN+
Sbjct: 840  WKSFFLSKKMRMLRVLDLEDAEGLQDPDLVPIGKLHHLKYLSLR-GSFGVFNLPNS 894


>05_05_0123 - 22553400-22554509
          Length = 369

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 970 QHDQGFHAHLVTLFTXCIIRRVDSSDSSVTCPARICSCSSSLRGPPFSAGG-AADGIREQ 794
           +H +  H      F+  I+R   S+ +S    +  CS SSS+R    S GG AA  +R  
Sbjct: 247 KHKERDHGGHRRSFSSVIVRYSTSNKTSPAPQSSSCSSSSSVRTSSESDGGAAAPALRRS 306

Query: 793 SQRDAQ 776
           S   ++
Sbjct: 307 SSASSE 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,324,606
Number of Sequences: 37544
Number of extensions: 631300
Number of successful extensions: 2364
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2364
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5046916980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)