Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_C01_e291_05.seq
(1563 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11173| Best HMM Match : Rop (HMM E-Value=1.7) 50 4e-06
SB_5546| Best HMM Match : SNARE (HMM E-Value=0.57) 41 0.003
SB_55311| Best HMM Match : SNARE (HMM E-Value=0.53) 39 0.012
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 34 0.27
SB_48548| Best HMM Match : HPPK (HMM E-Value=3.9e-09) 32 1.4
SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.4
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 31 3.3
SB_48420| Best HMM Match : SNARE (HMM E-Value=0.022) 30 4.4
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.4
SB_472| Best HMM Match : Cas1p (HMM E-Value=0) 30 5.8
SB_36224| Best HMM Match : ASC (HMM E-Value=1.9e-38) 29 7.7
>SB_11173| Best HMM Match : Rop (HMM E-Value=1.7)
Length = 212
Score = 50.4 bits (115), Expect = 4e-06
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Frame = +2
Query: 566 MLEPPTKVAKIFIPYAMRAKKIDMKQLKNCTWKML------TEKTP--------AGEKET 703
++ P KV KI I YA AKK+D+K+LK WK++ E P + E
Sbjct: 93 LVSQPNKVQKIDIAYAKTAKKMDVKKLKEAMWKLIQDTDINKENIPNEVEPEVHLNKDEF 152
Query: 704 VAATSFFSVYSRLPNKLSSNMRDSLSVPLALL 799
SF +Y +LP +S +M +LSVP+A +
Sbjct: 153 SDPRSFKEIYDQLPASISKHMAKNLSVPIAFV 184
>SB_5546| Best HMM Match : SNARE (HMM E-Value=0.57)
Length = 281
Score = 40.7 bits (91), Expect = 0.003
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 932 ESHEVGMKTLVMLDEQGEXLDXFEEG 1009
ES + G+KT+VM+DEQGE LD EEG
Sbjct: 225 ESQDTGIKTMVMIDEQGEQLDRVEEG 250
>SB_55311| Best HMM Match : SNARE (HMM E-Value=0.53)
Length = 56
Score = 38.7 bits (86), Expect = 0.012
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +2
Query: 935 SHEVGMKTLVMLDEQGEXLDXFEEG 1009
S + G+KT+VM+DEQGE LD EEG
Sbjct: 1 SQDTGIKTMVMIDEQGEQLDRVEEG 25
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 34.3 bits (75), Expect = 0.27
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 239 KTLATGHTWNEANFKTPIDRGLDESHFRKLFLRRKVVMLRK 361
KTL WN N+K+P R + + RK+F+ + MLR+
Sbjct: 201 KTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQ 241
>SB_48548| Best HMM Match : HPPK (HMM E-Value=3.9e-09)
Length = 170
Score = 31.9 bits (69), Expect = 1.4
Identities = 25/95 (26%), Positives = 44/95 (46%)
Frame = +2
Query: 302 LDESHFRKLFLRRKVVMLRKRDLERSKGAEPATVTVEELRDYNYNNENDASYCPSNMPNN 481
LD + +++ L+ + + R+RD + +K A P T+ + D ++N + YC ++
Sbjct: 34 LDSAGLKQVLLQIEKSLGRERD-KNNKNA-PRTIDL----DISFNGSKEIQYCLPIGSSS 87
Query: 482 DDWSNEDASAAIDLHEQVKLAEPDEITDMLEPPTK 586
WS D H + LA D D + P TK
Sbjct: 88 TTWSLPDPDTLKHAHVIIPLA--DVTPDFIHPRTK 120
>SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1379
Score = 31.9 bits (69), Expect = 1.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 691 GKGNCGGDFVLQRVLSTTQQIVVQHARQLERPA 789
GKG CG +V+ +VLS + ++ Q +RPA
Sbjct: 462 GKGGCGKTYVVSKVLSEANSHISPNSNQEDRPA 494
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 30.7 bits (66), Expect = 3.3
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 592 ENIHTVRDASEENRHETVEELH--VENVDGENTGRGKGNCGGDFVLQRVLSTTQQ 750
E+ R A EE H T+EELH VE + G+ + ++Q +T QQ
Sbjct: 700 EDAEQARQALEETMHTTIEELHEEVETLRSRLQDVGQAKLEAEKLVQDTQATVQQ 754
>SB_48420| Best HMM Match : SNARE (HMM E-Value=0.022)
Length = 215
Score = 30.3 bits (65), Expect = 4.4
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 920 ALCEESHEVGMKTLVMLDEQGEXLDXFEE 1006
AL ++SH+V +KT L QGE LD E+
Sbjct: 52 ALIDDSHDVAIKTAEELQYQGEQLDRTEK 80
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 30.3 bits (65), Expect = 4.4
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 839 PPILRRRCCRWHSR-AEPAGRSSCRACWTTICWVVESTR*RTKSPPQFPFPRP 684
P RR CR + R P R SC C T+ + + R R +PP+ P PRP
Sbjct: 1323 PSWARRGECRRNPRYMRPNCRKSCGLCTTSP--IPSTPRPRPPTPPRPPTPRP 1373
>SB_472| Best HMM Match : Cas1p (HMM E-Value=0)
Length = 932
Score = 29.9 bits (64), Expect = 5.8
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -3
Query: 943 LVTLFTXCIIRRVDSSDSSVTCPARICSCSSSLRGPPFSAGGAADGIREQSQRDAQAV 770
L+ ++RR+ S+ + CP IC + P S GG R Q D QAV
Sbjct: 303 LILAVAAFLVRRMQSNHRNNVCPP-ICPQTHMTPAAPASIGGDVQSFRLQRICDTQAV 359
>SB_36224| Best HMM Match : ASC (HMM E-Value=1.9e-38)
Length = 451
Score = 29.5 bits (63), Expect = 7.7
Identities = 22/97 (22%), Positives = 39/97 (40%)
Frame = +2
Query: 326 LFLRRKVVMLRKRDLERSKGAEPATVTVEELRDYNYNNENDASYCPSNMPNNDDWSNEDA 505
L + VV++ + + E A++ E R+ + S C +NM +DA
Sbjct: 54 LLILTSVVLIYQLAYSTQRVLEYASMVQVETRNEDSITFPAISICSNNMMQKSKILGKDA 113
Query: 506 SAAIDLHEQVKLAEPDEITDMLEPPTKVAKIFIPYAM 616
+DL +Q K + D I+ P + K Y +
Sbjct: 114 QRYLDLLDQKKEDQWDAISQSFSPDFDIEKAVHQYGL 150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,119,647
Number of Sequences: 59808
Number of extensions: 675467
Number of successful extensions: 2632
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2609
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5105932995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -