Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_C01_e291_05.seq
         (1563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24290.2 68418.m02858 integral membrane family protein contai...    35   0.13 
At5g24290.1 68418.m02857 integral membrane family protein contai...    35   0.13 
At1g59550.1 68414.m06696 UBX domain-containing protein contains ...    31   2.7  
At3g18800.1 68416.m02388 expressed protein                             30   3.6  
At5g39420.1 68418.m04775 protein kinase family protein contains ...    30   4.8  
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR...    29   6.3  
At5g63380.1 68418.m07955 4-coumarate--CoA ligase family protein ...    29   8.3  
At2g16290.1 68415.m01865 F-box family protein contains Pfam PF00...    29   8.3  
At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative ...    29   8.3  

>At5g24290.2 68418.m02858 integral membrane family protein contains
           Pfam domain PF01988: Integral membrane protein
          Length = 534

 Score = 35.1 bits (77), Expect = 0.13
 Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
 Frame = +2

Query: 269 EANFKTPIDRGLDESHFRKLFLRRKVVMLRKRDLERSKGAEPATVTVEELRDYNYNNEND 448
           E N +  +    ++S+  KL   ++   L   D E+++ +   +     L +     EN 
Sbjct: 134 EENNERSLSDSEEKSNLEKLLGTQENYELGNEDEEKNERSSSDSEEKSNLENLLATQENY 193

Query: 449 ASYCPS-------NMPNNDDWSNEDASAAIDLHEQVKLAEPDEITDMLEPPTKVAKIFIP 607
             YCPS       N+        +  ++++DL   + + EPDE +D+ E  + V K+++P
Sbjct: 194 ELYCPSCSTCITRNVVLKKRKRGKHVNSSLDLKPDIPVVEPDEPSDIEEMESPV-KVYVP 252


>At5g24290.1 68418.m02857 integral membrane family protein contains
           Pfam domain PF01988: Integral membrane protein
          Length = 550

 Score = 35.1 bits (77), Expect = 0.13
 Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
 Frame = +2

Query: 269 EANFKTPIDRGLDESHFRKLFLRRKVVMLRKRDLERSKGAEPATVTVEELRDYNYNNEND 448
           E N +  +    ++S+  KL   ++   L   D E+++ +   +     L +     EN 
Sbjct: 150 EENNERSLSDSEEKSNLEKLLGTQENYELGNEDEEKNERSSSDSEEKSNLENLLATQENY 209

Query: 449 ASYCPS-------NMPNNDDWSNEDASAAIDLHEQVKLAEPDEITDMLEPPTKVAKIFIP 607
             YCPS       N+        +  ++++DL   + + EPDE +D+ E  + V K+++P
Sbjct: 210 ELYCPSCSTCITRNVVLKKRKRGKHVNSSLDLKPDIPVVEPDEPSDIEEMESPV-KVYVP 268


>At1g59550.1 68414.m06696 UBX domain-containing protein contains
           Pfam profile PF00789: UBX domain
          Length = 307

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 461 PSNMPNNDDWSNEDASAAIDLHEQVK 538
           P N  N D WSNED S A++   ++K
Sbjct: 107 PCNTFNRDLWSNEDVSQALEFRGEIK 132


>At3g18800.1 68416.m02388 expressed protein
          Length = 197

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 803 SRAEPAGRSSCRACWTTIC 747
           S ++P+GR  CR CW  IC
Sbjct: 67  SLSQPSGRLHCRHCWAPIC 85


>At5g39420.1 68418.m04775 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 644

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = +2

Query: 101 DHGMRGDRRGTKRQLDFTGAGLAFDCRAEPAGEYEPTQPAKIMISRKTLATGHTWNEANF 280
           D   R D R  +  L    +G+    +     EY+P   AK+ I + TL   +  NEA+ 
Sbjct: 411 DAKYRDDMRRKRANLKLRDSGVGRKHKRPHRAEYDPKNYAKLPIRKDTLEVKNIPNEASR 470

Query: 281 KTPIDRG 301
            T    G
Sbjct: 471 ATTTTHG 477


>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1046

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = +2

Query: 227 MISRKTLATGHTWNE---ANFKTPIDRGLDESHFRKLFLRRKVVMLRKRDLERSKGAEPA 397
           M S  + +   TW      NF  P  R    SH RK F    + M   + +ERS+   PA
Sbjct: 1   MASSSSSSRSRTWRYRVFTNFHGPDVRKTFLSHLRKQFSYNGISMFNDQSIERSQTIVPA 60

Query: 398 -TVTVEELR 421
            T  ++E R
Sbjct: 61  LTGAIKESR 69


>At5g63380.1 68418.m07955 4-coumarate--CoA ligase family protein /
           4-coumaroyl-CoA synthase family protein similar to 4CL2
           [gi:12229665] from Arabidopsis thaliana, 4CL1
           [gi:12229631] from Nicotiana tabacum; contains Pfam
           AMP-binding enzyme domain PF00501
          Length = 562

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -1

Query: 828 PQAVLPMAFESRASGTLKLSRMLDDNLLGSREYTLKNEVAATVSFSPAGVFSVNIFHV 655
           P A+L   F S  +G +K   +   NL+ S   + +  +   V++   G+FS+ +FHV
Sbjct: 206 PAAIL---FSSGTTGRVKGVLLTHRNLIASTAVSHQRTLQDPVNYDRVGLFSLPLFHV 260


>At2g16290.1 68415.m01865 F-box family protein contains Pfam
           PF00646: F-box domain;
          Length = 415

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 368 DPSCVTSPLSASRIIYGNATRPVLY 294
           +P  + SPLS++RIIYG     VL+
Sbjct: 111 EPKLLLSPLSSNRIIYGMGINKVLF 135


>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative
           similar to GTL1 [Arabidopsis thaliana] GI:2664198
          Length = 669

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -2

Query: 719 TKSPPQFPFPR--PVFSPSTFSTCNSSTVS 636
           T +PP  P P   P+F+  TFS+ +SST S
Sbjct: 200 TPTPPPLPLPSMGPIFTGVTFSSHSSSTAS 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,391,878
Number of Sequences: 28952
Number of extensions: 444826
Number of successful extensions: 1555
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4202426112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)