Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B12_e378_04.seq
         (1485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    28   2.9  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    28   3.8  

>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 741 TIDIGRYFKWYWGSRRDTATYYVRVSVLTFTDYIIFLKY 625
           T+DI    +W+W        YY+ + ++ F  ++IFL Y
Sbjct: 422 TLDINSCREWFW-----IRIYYLYLKLMIFRPFLIFLAY 455


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 247 NINSSII*LHLFIYIYMLTKRHLHPILTVQRVNTFL 354
           N+ +  I L   +Y+Y++     HP L +  VNTF+
Sbjct: 61  NLATRDITLKKLVYLYLINYAKTHPDLCILAVNTFV 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,593,033
Number of Sequences: 5004
Number of extensions: 83457
Number of successful extensions: 138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 828548732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)