Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B11_e370_03.seq
         (1519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   6.8  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    27   6.8  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   6.8  

>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 590  IGNFGDILISHVLRRHA-VGYRFKKVGILRIYCYRVALQRK 709
            + +F D L+ H +RR   VG R  K      Y YRV+ ++K
Sbjct: 1274 LSDFRDDLLEHNVRRVTIVGGRINKSAYPSYYTYRVSAEQK 1314


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 150

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 16/63 (25%), Positives = 21/63 (33%)
 Frame = -2

Query: 1236 PXFFFXPXSGPPXPS*XPKXLXTXXAXXPKPX*GFVXLXPPKXXPCSPXXKASR*IXXPX 1057
            P   F P + PP  +  P+         P P        PP   P  P  + S     P 
Sbjct: 69   PFTNFYPLTAPPPYTAEPEARYNSTIHNPMPPMSQAYRPPPTEPPTVPAYETSSEFPPPA 128

Query: 1056 YPK 1048
            YP+
Sbjct: 129  YPE 131


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = -3

Query: 926  RXXXXLNTFXKTKTHSKRHSQSLSYSMTENKNKSRFSFEGGTRVLQSDIFVYF 768
            R     NTF     H ++    LS S+     +   S E   +VLQ D   +F
Sbjct: 1007 RQTDAANTFYSRHRHDRQKIMQLSNSLQNELKEHINSLESVRKVLQGDCVKWF 1059


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,836,570
Number of Sequences: 5004
Number of extensions: 90943
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 850352646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)