Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B11_e370_03.seq
         (1519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    33   0.53 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    33   0.53 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    33   0.53 
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr...    29   8.6  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform b protein.
          Length = 518

 Score = 33.1 bits (72), Expect = 0.53
 Identities = 32/135 (23%), Positives = 37/135 (27%)
 Frame = +2

Query: 1001 GQKXKPXGLXGGEXXFLGYXGXKIYRXAXSXGEQGLXLGGXSXTNPXXGLG*XAXXVIRX 1180
            G    P G  G +  F G  G           +QG   GG        G G       + 
Sbjct: 134  GFSGAPQGFGGNQGGFGGQTGFSEAPQGFGNNQQG-GFGGNQGNQ--GGFGGQNGQNGQN 190

Query: 1181 LGXYXGXGGPEXGXKKXXGGRPXLXGXXXXYXGGTRGPXLXPSGEXSPPXPAXGXXXXXP 1360
             G   G GG +       GG+    G       G RG    P     PP P         
Sbjct: 191  TGNNGGFGGNQGVTASGFGGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPLA 250

Query: 1361 XXXSPXPXKPXGXKP 1405
               SP P    G  P
Sbjct: 251  GSGSPPPPPAAGSPP 265


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform c protein.
          Length = 539

 Score = 33.1 bits (72), Expect = 0.53
 Identities = 32/135 (23%), Positives = 37/135 (27%)
 Frame = +2

Query: 1001 GQKXKPXGLXGGEXXFLGYXGXKIYRXAXSXGEQGLXLGGXSXTNPXXGLG*XAXXVIRX 1180
            G    P G  G +  F G  G           +QG   GG        G G       + 
Sbjct: 155  GFSGAPQGFGGNQGGFGGQTGFSEAPQGFGNNQQG-GFGGNQGNQ--GGFGGQNGQNGQN 211

Query: 1181 LGXYXGXGGPEXGXKKXXGGRPXLXGXXXXYXGGTRGPXLXPSGEXSPPXPAXGXXXXXP 1360
             G   G GG +       GG+    G       G RG    P     PP P         
Sbjct: 212  TGNNGGFGGNQGVTASGFGGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPLA 271

Query: 1361 XXXSPXPXKPXGXKP 1405
               SP P    G  P
Sbjct: 272  GSGSPPPPPAAGSPP 286


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform a protein.
          Length = 524

 Score = 33.1 bits (72), Expect = 0.53
 Identities = 32/135 (23%), Positives = 37/135 (27%)
 Frame = +2

Query: 1001 GQKXKPXGLXGGEXXFLGYXGXKIYRXAXSXGEQGLXLGGXSXTNPXXGLG*XAXXVIRX 1180
            G    P G  G +  F G  G           +QG   GG        G G       + 
Sbjct: 140  GFSGAPQGFGGNQGGFGGQTGFSEAPQGFGNNQQG-GFGGNQGNQ--GGFGGQNGQNGQN 196

Query: 1181 LGXYXGXGGPEXGXKKXXGGRPXLXGXXXXYXGGTRGPXLXPSGEXSPPXPAXGXXXXXP 1360
             G   G GG +       GG+    G       G RG    P     PP P         
Sbjct: 197  TGNNGGFGGNQGVTASGFGGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPLA 256

Query: 1361 XXXSPXPXKPXGXKP 1405
               SP P    G  P
Sbjct: 257  GSGSPPPPPAAGSPP 271


>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical protein
            R08E3.1a protein.
          Length = 1512

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 737  DFHFIXILSMENRRKYHFVVPWF-LLQN*TDFYF 835
            D  ++ +L +     YHFVVP++    N TD Y+
Sbjct: 1428 DDDYLTLLKLNTTNAYHFVVPFYDSADNSTDLYY 1461


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,672,365
Number of Sequences: 27780
Number of extensions: 572859
Number of successful extensions: 1010
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4359137160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)