Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B11_e370_03.seq
         (1519 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protei...    32   0.86 
At1g52100.1 68414.m05879 jacalin lectin family protein similar t...    31   2.0  
At1g31750.1 68414.m03895 proline-rich family protein contains pr...    30   4.6  

>At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protein /
            RNA recognition motif (RRM)-containing protein similar to
            SP|Q27294 RNA-binding protein cabeza {Drosophila
            melanogaster}; contains Pfam profiles: PF00076 RNA
            recognition motif (aka RRM, RBD, or RNP domain), PF00641:
            Zn-finger in Ran binding protein and others
          Length = 372

 Score = 32.3 bits (70), Expect = 0.86
 Identities = 19/59 (32%), Positives = 22/59 (37%)
 Frame = -1

Query: 1375 RGXGXRXXXXPPXGRXGGAXFPGRXQXXAPGSXXVTXGXXPKGXPAPXXFFXPXFWXPP 1199
            RG   R     P G  GG+   GR +    G+     G  P G  AP   F P  W  P
Sbjct: 154  RGVCNRCGTARPAGASGGSMGAGRGRGRGGGADGGAPGKQPSG--APTGLFGPNDWACP 210


>At1g52100.1 68414.m05879 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain; contains non-consensus AG
           donor splice site at exon3
          Length = 381

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 675 ESIAIELHSKERVIKHEKENWISILSXFYLWKI 773
           E I  E H KE ++ +E  NW   +S   LWK+
Sbjct: 345 EVILAERHGKETLLGYEDLNWTIRVSTLQLWKV 377


>At1g31750.1 68414.m03895 proline-rich family protein contains proline
            rich extensin domains, INTERPRO:IPR002965
          Length = 176

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
 Frame = -1

Query: 1312 PGRXQXXAPGSXXVTXGXXPKGXPAPXXFFXPXFWXPPPXVXPQTPY-XPXG 1160
            PG       G+     G  P+G P P   + P  + PPP   P   Y  P G
Sbjct: 26   PGAYPPPPQGAYPPPGGYPPQGYPPPPHGYPPAAYPPPPGAYPPAGYPGPSG 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,931,320
Number of Sequences: 28952
Number of extensions: 509255
Number of successful extensions: 849
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4057847232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)